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2b06_dms

Deep mutational scanning of Patrick Wilson 2B06 antibody

5k_hugh_vs_jesse

comparison of 5K race times by Hugh Haddox and Jesse Bloom

ab-cggnaive_dms

deep mutational scanning of the CGGnaive antibody

ace2_expression_neuts

alignparse

Align sequences and then parse features.

atlaspaper_sumo1_ube2i_expcm

analyses for Fritz Roth Atlas of Missense variants

barcoded_flu_pdmh1n1

Barcoded pdmH1N1 virus hashing experiment

bf520_mutationalantigenicprofiling_pgt151

binarymap

Binary representations of protein/nucleotide sequences.

codontilingprimers

Create NNN primers tiling codons of a gene for codon mutagenesis

cookiecutter-pypackage

Cookiecutter template for a Python package.

cov_229e_antigenic_drift

cov_evolutionary_space

cov_identities

Identities among SARS-CoV-2 variants and SARS-related coronaviruses

covid-19

Effect of genetic variants in COVID-19

deconvolver-code

divergence_timing_manuscript

paper on the effect of ExpCMs on branch lengths

dms-view-ms

Manuscript describing the `dms-view` visualization tool

dms_db

dms_struct

Visualize deep mutational scanning on protein structure.

dms_tools

Package for analyzing and visualizing deep mutational scanning (DMS) data

dms_tools2

software for the analysis and visualization of deep mutational scanning data

dms_variants

Analyze deep mutational scanning of barcoded variants.

dmslogo

draw sequence logos tailored to deep mutational scanning (DMS) data

egg_adaptation_perth2009_ha

Trying to identify egg adaptation mutations in H3 HA by deep mutational scanning

enfuvirtideresistance

envmutationalshiftspaper

Hugh's paper on shifting mutational effects in HIV Env

envsantigenicatlas

Mutational antigenic profiling of a panel of HIV bnAbs

epistasis

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

evans_structures_public