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slicerfreesurfer

This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.

slicergitsvnarchive

Multi-platform, free open source software for visualization and image computing.

slicerheart

3D Slicer extension for cardiac analysis

slicerigt

Modules supporting image-guided interventions in 3D Slicer.

slicerimstk

Mirror of https://gitlab.kitware.com/iMSTK/SlicerIMSTK

sliceritkultrasound

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

slicerjupyter

Extension for 3D Slicer that allows the application to be used from Jupyter notebook

slicerlanguagepacks

3D Slicer extension for creating, editing, and storing translations for Slicer core and extensions

slicerleapmotioncontrol

Control 3D Slicer using the LeapMotion controller

slicerlookingglass

Extension for 3D slicer that enables user to visualize the 3D scene using the Looking Glass hardware display.

slicermarkupstomodel

3D Slicer extension to create tube or closed surface model from markup fiducials

slicermixmatchextension

This extension illustrates some atypical integration of Slicer module components

slicermonaiviz

MONAIViz - 3D Slicer Extension

slicermorph

Extensions to conduct 3D morphometrics in Slicer

slicernotebooks

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

sliceropencv

Slicer Extension wrapping OpenCV

sliceropenigtlink

OpenIGTLinkIF module as an Slicer Extension

slicerpackages

A Midas 3 plugin for hosting Slicer packages

slicerparalleltest

Testing code for running two Slicer CLIs in parallel and illustrates issue described here: https://discourse.slicer.org/t/running-a-module-in-parallel/12641/11

slicerpathology

3D Slicer extension for Pathology segmentation tools

slicerpipelines

Pipelines are an extension for 3DSlicer that will offer the ability to create simple modules (aka pipelines) via a GUI interface with no coding knowledge needed.

slicerprogrammingtutorial

slicerpy

Collection of handy slicer python scripts

slicerradiomics

A Slicer extension to provide a GUI around pyradiomics

slicerregistrationqa

Registration Quality Assurance Module for 3D Slicer

slicerrt

Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.

slicerrvxliversegmentation

3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X

slicersalt

An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power. Altogether this constitutes a crucial resource for the imaging field that will enable many and important new findings in biomedical imaging studies.

slicersalt.github.io

slicersandbox

Collection of utilities that are not polished implementations but can be useful to users