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impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

impres-codes

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

ims_gene_signature

Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

infercnv

Inferring CNV from Single-Cell RNA-Seq

intro-to-chipseq

Intro to ChIPseq using HPC

intro-to-rnaseq-hpc-salmon

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

ipsov

iptw

This R package calculates various measures of association and helps understand and visualize the link between causal models such as Marginal Structural Models and Standerdized measures.

irls

Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer

jams_bw

Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)

jiang-lab

jianguozhouzunyimedicaluniversity

jmbayes

Joint Models for Longitudinal and Survival Data using MCMC

jmbayes2

Extended Joint Models for Longitudinal and Survival Data

kassandra

Bostongene cell deconvolution algorithm from RNAseq

kit-nfold-cv-glmnet

Function that performs 1,000 iterations of n-fold cross validation, default is LASSO penalized regression

knife

Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms

kraken2

The second version of the Kraken taxonomic sequence classification system

lab_2021

Repository for all the labs for Spring 2021

lancet

Microassembly based somatic variant caller for NGS data

lch_hierarchy

Code for Epigenomics and Single-cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis (Halbritter, Farlik, et al. 2019 Cancer Discov.)

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

lncpipe

See the update fork of this repository here >>> https://github.com/nf-core/lncpipe/tree/dev

lncrna

lncRNA分析流程

lncrna-1

De novo lncRNA discovery pipeline, re-write of PLAR by shell and awk

lncrna_bc

It is a repository that contains information about my master's project. The main topic is lincRNA as biomarkers in breast cancer. The main objective is to identificate lincRNA biomarkers by transcriptome analysis

lncrna_finder

The open source code of pipeline for the identification of long non-coding RNAs

long-read-rna-pipeline

ENCODE long read RNA-seq pipeline