Version: 1.0

This tool converts Bruker raw files into tabulated txt file for BATMAN.

• Format Converter

• Format Converter for BATMAN

• Metabolomics

• NMR / 1D NMR

• Originally developed by Tim Ebbels and Jie Hao (Imperial College London)
• Maintained by Jianliang and Vagelis (Imperial College London)

• Jianliang and Vagelis

• https://github.com/jianlianggao/container-bruker2batman.git

in the folder where Dockerfile is hosted and run docker build -t <your_docker_image_name>:latest .

Copy Bruker raw data files into <path/to/data/folder>

Change work dir to <path/to/data/folder> and run

docker run -v $PWD:/data -ti <your_docker_image_name> -i /data/

A rudimentary Galaxy node description is included as bruker2batman.xml.