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gdct's Introduction

Hello, welcome!

I currently work on proteogenomic analysis1, whose generic features are collected for reproducible research.

Footnotes

  1. CASP14-t1091

    The sunflowr figure is from CCTV4 covering Baiyin, Gansu province, China.

    The protein diagram is generated from Jumper, J., et al. (2021). Highly accurate protein structure prediction with AlphaFold. Nature 596(7873): 583-589, https://doi.org/10.1038/s41586-021-03819-2 (Suppl. video 4) with ffmpeg in a module.

    module load ceuadmin/ffmpeg
    ffmpeg -i jumper21s4.mp4 -ss 8 -t 8 s4.mp4
    ffmpeg -i s4.mp4 -f gif s4.gif
    ffprobe s4.gif
    ffmpeg -i s4.gif -s 640x360 CASP14-t1091.gif
    ffmpeg -i CASP14-t1091.gif -vf "drawtext=fontsize=20:text='CASP14-t1091':fontcolor=red:x=25:y=30" CASP14-t1091-text.gif
    

    Additional information is available from "Critical Assessment of protein Structure Prediction (CASP)", https://predictioncenter.org/casp14/

    See also Lin, Z., et al. (2023). Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379(6637): 1123-1130, https://doi.org/10.1126/science.ade2574. โ†ฉ

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