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View Code? Open in Web Editor NEWTaxonomical and Functional Profiling for Shotgun Metagenomic Sequencing
Taxonomical and Functional Profiling for Shotgun Metagenomic Sequencing
Hi, when i run "perl ../MetaPrism_heatmap.pl -h", the error is "Can't locate Statistics/R.pm in @inc (you may need to install the Statistics::R module)" ;
then I install the module using the code "cpan Statistics::R",
there are still errors "Failed 1/9 test programs. 1/10206 subtests failed.
Makefile:788: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 1"
Thank you very much.
fa.gz file are not readable for MetaPrism_gene.pl, any possibility to add support for fasta format?
Jianshu
Please add randomForest
to READMD.md
It is required for prediction.
No gene prediction software were used for reliable prediction of genes. Using only start and stop Condon can make mistakes without using hidden malcof model. Please use prodigal or GeneMark.hmm for gene prediction and then do the mapping for abundance calculation. Uniref 100 is also available now and is very useful. Can you please update.
Thanks,
Jianshu
ERROR in MetaPrism_comparison.pl: Use of uninitialized value $sample in hash element at MetaPrism_comparison.pl line 66, <$reader> line 7.
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