jizhihang / darwin-just-so- Goto Github PK

darwin

Medical Image Analysis and Classification Tools

Named after Charles Darwin (1809-1882), who was an English naturalist and geologist, best known for his contributions to evolutionary theory. Through fauna classification he was able to infer the evolutionary theory.

Dependencies

Please see the requirements.txt and pip_requirements.txt files.

Install

This package uses setuptools and Makefiles.

I've made a workaround to deal with build dependencies of some requirements. So there are two requirements files: requirements.txt and pip-requirements.txt. The requirements.txt dependencies must be installed one by one, with:

make install_deps

The following command will install everything with all dependencies:

make install

If you already have the dependencies listed in requirements.txt installed, to install in your home directory, use:

python setup.py install --user

To install for all users on Unix/Linux:

python setup.py build
sudo python setup.py install

You can also install it in development mode with:

make develop

Development

Code

Github

You can check the latest sources with the command:

git clone https://www.github.com/neurita/darwin.git

or if you have write privileges:

git clone [email protected]:neurita/darwin.git

If you are going to create patches for this project, create a branch for it from the master branch.

The stable releases are tagged in the repository.

Testing

TODO