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I'm interested in projects at the intersection of (digital) humanities and computer science. The focus of my PhD research is the adaptation and application of phylogenetic methods for textual criticism, specifically in the tradition of the Greek New Testament. You'll likely find new tools for preparing transcription and collation data (especially in TEI XML format) for phylogenetic and other analyses on here as I continue to develop them according to my and others' needs. Occasionally, I'll also host textual transcriptions and data for digital editions on here.

I've also produced my own implementation of the Coherence-Based Genealogical Method (CBGM), an approach to textual criticism developed for open traditions like that of the New Testament. The core library (https://github.com/jjmccollum/open-cbgm) and the command-line interface (https://github.com/jjmccollum/open-cbgm-standalone) are available here, and they are being incorporated into more user-friendly software by other developers on GitHub; I'll keep you posted as more updates become available!

Joey McCollum's Projects

beast2bayes icon beast2bayes

Python utility for converting .trees and .log files from BEAST 2 to .t and .p files from MrBayes

calclac icon calclac

A Python script for calculating the likelihood of reconstructed texts in lacunae

collation-nmf icon collation-nmf

General-purpose Python tools to perform non-negative matrix factorization on textual collations

context-sbl icon context-sbl

Society of Biblical Literature (SBL) style files for ConTeXt

dianoia-beamer icon dianoia-beamer

LaTeX template for Australian Catholic University's Dianoia Institute of Philosophy Beamer presentations

ga-274 icon ga-274

Data for the study on the tenth-century minuscule Gregory-Aland 274.

intf-cbgm icon intf-cbgm

"Genealogical Queries" - A Tool for the Coherence-Based Genealogical Method

irci-beamer icon irci-beamer

LaTeX template for Australian Catholic University's Institute for Religion and Critical Inquiry Beamer presentations

itsee-to-open-cbgm icon itsee-to-open-cbgm

Utility script for reformatting the TEI XML output of the ITSEE Collation Editor (DEPRECATED: Use https://github.com/d-flood/apparatus-explorer.)

jude-nmf icon jude-nmf

Non-negative matrix factorization applied to Wasserman's collation of the epistle of Jude.

keter-yg icon keter-yg

Yoram Gnat's Keter-YG Hebrew typeface with minor typographical features added

luke-9-35-collation icon luke-9-35-collation

Collation data and notes on over 4000 manuscripts of Luke, over 2500 have currently accessible data and over 2100 of which are extant in Luke 9:35.

nmf-ps-talk icon nmf-ps-talk

Resources and Beamer presentation for 2020 Phoenix Seminary talk on non-negative matrix factorization

open-cbgm icon open-cbgm

Fast, compact, open-source, TEI-compliant C++ implementation of the Coherence-Based Genealogical Method

open-cbgm-sbl-supplement icon open-cbgm-sbl-supplement

Supplementary material for the SBL Annual Meeting 2020 talk "The open-cbgm Library: Design and Demonstration."

open-cbgm-sbl-talk icon open-cbgm-sbl-talk

Resources and Beamer presentation for 2020 SBL Annual Meeting talk on the open-cbgm library.

phylo-csntm-talk icon phylo-csntm-talk

Slides for a lecture on phylogenetics and the CBGM with CSNTM staff (12 February 2024)

sbl-2023-talk icon sbl-2023-talk

Datasets and slides for 2023 SBL Annual Meeting talk, "Bayesian Textual Criticism since Hort: A Synthesis and Demonstration"

sblgnt-tei icon sblgnt-tei

TEI XML transcription of the text and apparatus of the SBL Greek New Testament

teiphy icon teiphy

A Python package for converting TEI XML collations to NEXUS, BEAST 2.7 XML, and other formats

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