jlopezalo / pyfmgui Goto Github PK

There are parameters like the tip radius and tip geometry that should be synchronized across the different analysis windows.

Hello Javier,

I had used the PyFMGUI and PyFMRheo to play with my data.
following are the things that bugged me as an end user,

• the Init-d0 parameter is not exported in the hertz fit table.
• the measured sample height is also not exported in the Hertz fit table
• the PoC parameters that are instrumental for hertz fit is not exported in the hertz fit table.
• it would be useful to have a variable to a flag a given curve for further analysis or not within the force curve class.
• the range indentation data used for estimating the fit is also not exported in the Hertz fit table.

let me know what are your thoughts on my suggestions.
and maybe implementing all this in the GUI could be challenging.

Best,
Yogesh Saravanan
P.S. Congratulations on a successful PhD defence.

hello Javi,

there is a discrepancy in the map coordinates of a force map from JPk files.
The selected force curve in the sample height map(piezo image) and the curve displayed in the analysis window(four plots) are different.
I am attaching an image of the PyFM GUI map coordinates and expected coordinates to recreate the expected force map.

The error in the current pattern is that code flips the odd columns instead of odd rows of data and to correct this error, the code at line 146 in loadjpkimg.py in the pyfmreader package should be tweaked.

piezoimg_ys = np.zeros((N,N))
for i in range(N):
piezoimg_ys[:,i] = piezoimg[:,i]
if i%2==1:piezoimg_ys[:,i] = (np.flip(piezoimg[:,i]))

Although there is the paper on the software depicting the models, documentation on how to use the GUI must be generated to help new users.

Right now before the results are exported they are loaded into a single pandas data frame. If the dataset analyzed is large and there is not enough available memory the application will crash.

Instead of crashing the application should show a dialog describing the problem.

Additionally, the export result process should be reworked to make it less memory intensive.

Either it freezes or it does not update the table. Failed after microrheology and Hertz fits.
Thanks.

Right now some elements of the GUI (i.e. checkboxes) are hard to see. These elements should be more clear.

Open the last used folder by default when launching PyFM