jmxpearson Goto Github PK

bart

Task files for a continuous-time version of the balloon analogue risk task (BART)

bart_analysis

Analysis code and figure generation for intracranial recording experiment using the balloon analogue risk task

bayesrl

Code to fit Bayesian versions of simple reinforcement learning models

cfos_counts

Simple models of cfos count data.

chang_et_al_2015

Models for Chang et al. 2015

cloudmorph

Finding spurious structure in high-dimensional data

cogneuro_lectures

Lecture notes for the cogneuro graduate class.

cpgas

Fast temporal inference via a changepoint gas

dibs_materials

Teaching materials for DIBS

diffabledistributions.jl

Render distributions from Distributions.jl compatible with forward mode automatic differentiation from ForwardDiff.jl

distribution_diff_tests

Integration tests of ForwardDiff.jl and Distributions.jl

distributions.jl

A Julia package for probability distributions and associated functions.

duke-julia-ssri

Materials for SSRI's introduction to Julia.

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

gpflow

Gaussian processes in TensorFlow

hddm

HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).

hephys

Analysis of electrophysiology from BART

hopfield-demo

Demonstration of Hopfield networks for DIBS Bootcamp 2020

jmxpearson.github.io

John's web page

julia

The Julia Language: A fresh approach to technical computing.

julia-for-pythonistas

Materials for the Julia for Pythonistas tutorial at Pydata Carolinas 2016

juliacon-2016-talk

Slides and code for my talk at JuliaCon 2016

laf

Implementation of locally adaptive factor processes

matlab-neurobio

Notes, assignments, and code for Quantitative Neurobiology (Spring 2018).

metadata.jl

Metadata for registered Julia packages.

mindreader

task code for mind reading

mscope

A microscopic in-browser viewer for electrophysiology data

neural-data-analysis-book

neuro-bootcamp

Material for DIBS Neuro Bootcamp 2014

pdmats.jl

Uniform Interface for positive definite matrices of various structures