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Name: John Sundh
Type: User
Company: @NBISweden
Bio: Bioinformatician working for @NBISweden and specializing in metagenomics, Snakemake workflows and reproducible research.
Location: Karlstad
Name: John Sundh
Type: User
Company: @NBISweden
Bio: Bioinformatician working for @NBISweden and specializing in metagenomics, Snakemake workflows and reproducible research.
Location: Karlstad
Bremges et al. (2015). GigaScience, 4:33.
16S rRNA amplicon sequencing analysis workflow using QIIME2
ATLAS - Three commands to start analyzing your metagenome data
Conda recipes for the bioconda channel.
Collection of scripts used for bioinformatic analyses
Interactive toolkit to produce high-quality graphs of results from sequencing projects
Scripts related to the blueprint project
Code to clean up ASV clustering results and generate stats
A repository hosting results and figures for evaluating metagenomic binners on data used in Mehrshad et al.
De novo Extraction of Strains from MetAgeNomes
Fast genome-wide functional annotation through orthology assignment
Utility to handle output from eggnog-mapper. Includes downloading KEGG information files, linking Kegg orthologs to enzymes and pathways and quantifies annotations.
Code used to plot results for article in project "Improving digestibility of silage fibre by use of feruloly esterase producing microorganisms as a silage additive"
Exercise to practice collaborative forking workflow.
GATB Minia assembly pipeline
Conda environment and package management extension from within Jupyter
An algorithm for recovering haplotypes from metagenomes
A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
Create an online book with Jupyter Notebooks and Jekyll
Kraken taxonomic sequence classification system
Snakemake workflow to map and quantify metatranscriptomic data using a metagenome reference
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.