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enhancedtxdbs

Provides functions for creating Bioconductor TranscriptDb objects from Ensembl.

ensdb.hsapiens.v75

EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75

ensembl-exon-probemapping

Perl scripts to create custom CDF files and packages for Affymetrix microarrays.

ensembldb

This is the ensembldb development repository.

ensembldb-old

NOTE: that's the version prior to the Bioconductor github mirror. The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes.

eurobioc2016-basel-msnbase2

Slides for the EuroBioc2016 meeting in Basel

eurobioc2016-ensembldb

Material for the European Bioconductor Developer's Meeting 2016 in Basel, Switzerland

eurobioc2017-annotationfilter

Slides for flashlight talk for AnnotationFilter and ensembldb at the European Bioconductor Meeting 2017 in Cambridge, UK.

eurobioc2017-msnbase

Slides for the flashlight talk about on-the-fly data access and MS write support added to mzR/MSnbase/xcms for the European Bioconductor Developer Meeting 2017 in Cambridge, UK.

eurobioc2018-ensembldb

Slides for the European Bioconductor developer conference 2018

fill-column-indicator

An Emacs minor mode that graphically indicates the fill column.

flatui-emacs

Emacs theme based on the Falt UI color scheme

generalgcrma

An R package to perform GCRMA background adjustment for Affymetrix Tiling, Exon and Gene ST microarrays.

genomeinfodb

Utilities for manipulating chromosome and other 'seqname' identifiers

genomeplotr

ggbio

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ggbio.html Contributions: http://tengfei.github.com/ggbio/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ggbio or https://github.com/tengfei/ggbio/issues.

github-example

Just some test repository

github_playground

Some testing stuff

gnpsdocumentation

gruvbox-emacs

Simple Emacs color theme based on the gruvbox theme for Vim and using logic from the solarized-emacs theme.

gseabase

Gene set enrichment data structures and methods

gviz

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Gviz.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Gviz.

install_scripts

Some installation scripts to easily set up Mac OS system to my needs.

isee_gviz

custom gviz panel for iSEE

jos-csama-contributions

Lectures and labs I'm providing/giving at the CSAMA Bioconductor courses

jotsetung.github.io

some html content.

macbook-keyboard-fix.el

Simple emacs mode that avoids double/triple insertion of certain characters from a single key stroke happening on the new butterfly keyboard on macbook pro > 2016.

massbank-web

The web server application and directly connected components for a MassBank web server

memacs

Make file to fetch and build emacs add-ons.

metaboanalystr

R package for MetaboAnalyst