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multiz

DNA multiple sequence aligner, official version from Penn State's Miller Lab

omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation

onyxia

🔬 Web app to simplify data science environment setup on Kubernetes

peca

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

periodicdna

periodicDNA R package

profileplyr

pytesseract

A Python wrapper for Google Tesseract

python_practice

r-ebook

R programming ebooks

readdepth

R package for inferring copy number from read depth

rfast

A collection of Rfast functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you

rna-seq-pipeline

rsat-code

scannet

scgpt

scripts

Bash, awk, R, python scripts and binaries for genomic and transcriptomic data analysis

seatac

somaticwrapper

Detect somatic variants from tumor and normal WGS/WXS data

staticrypt

Password protect a static HTML page

tcga_pancancer_unwantedvariation

tesseract

Tesseract Open Source OCR Engine (main repository)

twstock

台灣股市股票價格擷取 (含即時股票資訊) - Taiwan Stock Opendata with realtime

useq

180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering, alignment/VCF QC, capture array design, IGV/ DAS2/IGB/UCSC file manipulation, etc. Both GUI and cmd line interfaces.