Comments (8)
There was a bug in the transporter prediction script. Thanks for reporting!
FWIW, the option -m nitrogen
won't work, because there's no metabolite to test here. The molecule
gapseq find-transport -b 200 -m Ammonia genome.fasta
(testing for
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It's working as expected on the two Linux systems I tested.
Did you update gapseq to the latest development version (e.g. via git pull
)?
Please provide the output of gapseq test
and the exact command you used.
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hi @ashish193006
Could you please try ./gapseq find-transport -b 200 -m Ammonia toy/myb71.fna.gz
?
And if this fails, can you copy and paste the output of ./gapseq test
?
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hi I'm sorry for the late response!
It seems it didn't work because you forgot to update to the newest version after the initial problem was fixed.
If it is still a problem, please update to the latest gapseq version (e.g., via git pull
) and try again.
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