Comments (1)
Hey Pavel, conda install
actually attempts to match your downloaded resources. The best way to get the most up-to-date version of everything is to create a new conda environment conda create -n ddocent -c bioconda ddocent
from ddocent.
Related Issues (20)
- Downgrade conda vcftools version dependency HOT 2
- Program stuck in using BWA mapping reads HOT 2
- please make a new release on github HOT 1
- ReferenceOpt.sh - kopt.data output HOT 1
- Use bedops instead of bedools merge for memory efficiency HOT 5
- miniconda recipe with samtools bug? HOT 1
- CD-HIT runs forever / never finishes HOT 2
- Very inefficent scan of full reference genome HOT 2
- performance bottleneck HOT 1
- Suggested parameters for bam filtering HOT 5
- fastp v 0.19.5 issue
- remove duplicates prior to variant calling HOT 2
- ulimit silent error (bug) HOT 1
- missing data in merged vcf file HOT 1
- too many arguments for ls and rm
- Genomic interval creation failed HOT 3
- sh: /dev/tty: No such device or address HOT 1
- #'head: cannot open 'reference.fasta' for reading: No such file or directory' while running denovo assembly HOT 3
- Question about ErrorCount.sh HOT 1
- Info about the number of mapped reads etc. HOT 5
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from ddocent.