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Hi there ๐Ÿ‘‹

I'm currently a Computational Biologist @Roche. I completed my PhD in computational epigenetics at the University of Toronto in the @LupienLab.

  • ๐Ÿ’ฌ Ask me about mathematics, physics, technology, and anything else, really
  • ๐Ÿ”ญ I have a website where I blog about a variety of things, mostly science and bioinformatics
  • ๐Ÿ‘ฏ I'm getting into developing in Rust, thinking about the IndieWeb
  • ๐Ÿด I like to cook and bake, and have my recipes on my website
  • ๐Ÿ“ซ How to reach me:

James Hawley's Projects

link-validator icon link-validator

A CLI tool to find all links in Markdown files and check that they exist.

macs icon macs

MACS -- Model-based Analysis of ChIP-Seq

manim icon manim

Animation engine for explanatory math videos

myip icon myip

Golang command line tool for getting current IP address and location

n1diff icon n1diff

Differential gene expression with James-Stein estimators

neoloopfinder icon neoloopfinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

orgize icon orgize

A Rust library for parsing orgmode files.

pdftools icon pdftools

small collection of python scripts for pdf manipulation

pyinterval icon pyinterval

PyInterval โ€” Interval arithmetic in Python

quill icon quill

Query bills and accounts to check on your financial statements.

r-color-palettes icon r-color-palettes

Comprehensive list of color palettes available in r โค๏ธ๐Ÿงก๐Ÿ’›๐Ÿ’š๐Ÿ’™๐Ÿ’œ

scoop-main icon scoop-main

๐Ÿ“ฆ The next-generation default bucket for Scoop.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

terminal icon terminal

Custom terminal setup for Linux and Mac

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