James Hawley's Projects
A CLI tool to find all links in Markdown files and check that they exist.
Linux Kernel for Surface Devices
MACS -- Model-based Analysis of ChIP-Seq
Animation engine for explanatory math videos
Saved work during Lupien rotation
Golang command line tool for getting current IP address and location
Differential gene expression with James-Stein estimators
Python NGS Repository
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
A Rust library for parsing orgmode files.
Intuitively modify your `$PATH`
ATAC-seq data analysis for Pal Singh, Jeyaraju, et al., Cell Stem Cell, 2020
small collection of python scripts for pdf manipulation
PhD thesis
PubPeer extension for Microsoft Edge
Python bindings for CRlibm
PyInterval โ Interval arithmetic in Python
Template for building Python packages that can be easily bundled as Anaconda packages, too
Query bills and accounts to check on your financial statements.
Comprehensive list of color palettes available in r โค๏ธ๐งก๐๐๐๐
Recipe book
Template repo for scientific research projects
Personal bucket for Scoop apps
๐ฆ The next-generation default bucket for Scoop.
ATAC-seq data analysis for Seneviratne, Xu, et al., Cell Stem Cell, 2019
This is the development home of the workflow management system Snakemake. For general information, see
Useful data routines
TADsplimer
Custom terminal setup for Linux and Mac