Microbiome Coverage Profiler
In the repository there is a virtual environment (venv) with python and the necessary packages installed already Access the virtual environment using the command
source venv/bin/activate
mbprofile.py takes in 2 arguments:
- The csv file with mapped reads (str)
- the read length (int)
To run the code you can call it like this:
python mbprofile.py rop_output_file.csv 100
After you are done with the virtual environment, you can close the environment with the command
deactivate