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adjoint_method

Use the adjoint method and gradient descent to find the parameters of an ODE

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python

bayesiantracker

Bayesian multi-object tracking

cartography

Making maps in python

colony_counter

Count colonies on scanned agar plates. Example image included.

cs205-admm

Group 17 final project for Harvard CS 205, Spring 2020.

dask-regionprops

Calculate labelled region properties with dask delayed and dataframe

data-sharing

Datasets from my work that I wanted to be publicly accessible.

davy-jones

Python API for controlling the Insight DeepSee Lasers for automated microscopy experiments

intermediate-python

Python lessons focusing on numpy and the scientific python stack for Qbio REU students.

jrussell25.github.io

ml-miscellany

mpl-interactions

Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook

numerical_pde

My solutions to some exercises in numerically solving PDE.

pyrepo-cookiecutter

personal repo bootstrap

qbio-python

Materials for python workshops for Harvard QBio REU students

scratch-former

Building a gpt-like language model from "scratch"

srs-tools

Code for analysis of SRS experiments

xr-single-cell

Xarray accessor for quantifying single-cell ROIs

yeaz-gui

An interactive tool for segmenting yeast cells using deep learning.