jujubix / hmmcopy Goto Github PK
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Home Page: http://master.bioconductor.org/packages/release/bioc/html/HMMcopy.html
Source code for Bioconductor Package HMMcopy
Home Page: http://master.bioconductor.org/packages/release/bioc/html/HMMcopy.html
Hi, thanks for the nice package.
Think I found a bug in plotCorrection & plotSegments. Chromosome specific plots did not work for me, copy numbers of all chromosomes were plotted simultanously in the same plot.
Problem is
chr = 1
correctOutput <- subset(correctOutput, chr == chr)
does not produce the same as
correctOutput <- subset(correctOutput, chr ==1).
Instead correctOutput <- subset(correctOutput, chr == chr) does not subset correctOutput, but keeps the whole data.
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