kaneplusplus / akde-pubmed Goto Github PK
View Code? Open in Web Editor NEWAugmeted Knowledge Discovery for PubMed
License: GNU General Public License v2.0
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Add time series visualization by months
Add cross sectional novelty to UN exploration
"journal articles" vs. "Journal Articles" should be lumped together.
Add time series visualization
'Nuff said
Add a document view to the UN time-series data
"Journal" retrieval failing when querying PubMed.
Remove "species" column dependence in ebola_vis/s.r
Issues with supporting packages
There appears to be a number of error messages occurring due to changes in the supporting packages (eg., LDAviz should be LDAvis, etc). Would you be able to re-run your examples on a clean R installation, please. I ran the following (pursuant to the R meeting last week) and getting it to work has been challenging.
source("entrez.r")
query <- "brucellocis OR 'machine learning'"
max_ids <- 2000
doc <- pm_doc_info(query, max_ids)
names(doc)
plot_article_activity(query, max_ids) # Does not exist
journal_hist (query, max_ids) # Missing width error
etc
Add a document view to the UN cross-sectional data
create_pm_query_df problem
create_pm_query_df is using max_docs_per_query and chunk_size interchangeably. This needs to be fixed.
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