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cravat's Issues

mysql process continually exiting

I am running cravat with the following command:
docker run --name cravatmupit -p 80:8080 -v /Users/my_path_to_local_dir/mysql:/var/lib/mysql -v /Users/my_path_to_local_dir/storage:/ext karchinlab/cravatmupit:5.0.2

Often (4 out of 5 times I run the container) mysql get's stuck in a continually exiting state:

2017-10-04 12:39:15,778 INFO exited: mysql (exit status 1; not expected)
2017-10-04 12:39:16,190 INFO spawned: 'mysql' with pid 92
2017-10-04 12:39:17,437 INFO success: mysql entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
2017-10-04 12:39:18,173 INFO exited: mysql (exit status 1; not expected)
2017-10-04 12:39:19,176 INFO spawned: 'mysql' with pid 112

Here is the portion from /var/log/mysql/error.log on the running container that is repeating:

171003 18:46:42 [Warning] Using unique option prefix myisam-recover instead of myisam-recover-options is deprecated and will be removed in a future release. Please use the full name instead.
171003 18:46:42 [Note] Plugin 'FEDERATED' is disabled.
171003 18:46:42 InnoDB: The InnoDB memory heap is disabled
171003 18:46:42 InnoDB: Mutexes and rw_locks use GCC atomic builtins
171003 18:46:42 InnoDB: Compressed tables use zlib 1.2.8
171003 18:46:42 InnoDB: Using Linux native AIO
171003 18:46:42 InnoDB: Initializing buffer pool, size = 128.0M
171003 18:46:42 InnoDB: Completed initialization of buffer pool
171003 18:46:42 InnoDB: highest supported file format is Barracuda.
171003 18:46:42  InnoDB: Waiting for the background threads to start
171003 18:46:43 InnoDB: 5.5.57 started; log sequence number 1595675
ERROR: 1064  You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'ALTER TABLE user ADD column Show_view_priv enum('N','Y') CHARACTER SET utf8 NOT ' at line 1
171003 18:46:43 [ERROR] Aborting

171003 18:46:43  InnoDB: Starting shutdown...
171003 18:46:44  InnoDB: Shutdown completed; log sequence number 1595675
171003 18:46:44 [Note] /usr/sbin/mysqld: Shutdown complete

171003 18:46:44 [Warning] Using unique option prefix myisam-recover instead of myisam-recover-options is deprecated and will be removed in a future release. Please use the full name instead.
171003 18:46:44 [Note] Plugin 'FEDERATED' is disabled.
171003 18:46:44 InnoDB: The InnoDB memory heap is disabled
171003 18:46:44 InnoDB: Mutexes and rw_locks use GCC atomic builtins
171003 18:46:44 InnoDB: Compressed tables use zlib 1.2.8
171003 18:46:44 InnoDB: Using Linux native AIO
171003 18:46:44 InnoDB: Initializing buffer pool, size = 128.0M
171003 18:46:44 InnoDB: Completed initialization of buffer pool
171003 18:46:44 InnoDB: highest supported file format is Barracuda.
171003 18:46:44  InnoDB: Waiting for the background threads to start
171003 18:46:45 InnoDB: 5.5.57 started; log sequence number 1595675
171003 18:46:45  InnoDB: Starting shutdown...
171003 18:46:46  InnoDB: Shutdown completed; log sequence number 1595675
171003 18:46:46 [Warning] Using unique option prefix myisam-recover instead of myisam-recover-options is deprecated and will be removed in a future release. Please use the full name instead.
171003 18:46:46 [Note] Plugin 'FEDERATED' is disabled.
171003 18:46:46 InnoDB: The InnoDB memory heap is disabled
171003 18:46:46 InnoDB: Mutexes and rw_locks use GCC atomic builtins
171003 18:46:46 InnoDB: Compressed tables use zlib 1.2.8
171003 18:46:46 InnoDB: Using Linux native AIO
171003 18:46:46 InnoDB: Initializing buffer pool, size = 128.0M
171003 18:46:46 InnoDB: Completed initialization of buffer pool
171003 18:46:46 InnoDB: highest supported file format is Barracuda.
171003 18:46:46  InnoDB: Waiting for the background threads to start
171003 18:46:47 InnoDB: 5.5.57 started; log sequence number 1595675
ERROR: 1050  Table 'plugin' already exists
171003 18:46:47 [ERROR] Aborting

171003 18:46:47  InnoDB: Starting shutdown...
171003 18:46:47  InnoDB: Shutdown completed; log sequence number 1595675
171003 18:46:47 [Note] /usr/sbin/mysqld: Shutdown complete

I have tried:

  • Removing the image from my local machine and re-pulling
  • Pulling and running different tags (hybrid, latest, 5.0.1)

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