karini925 Goto Github PK
Name: Karina
Type: User
Company: Columbia University
Bio: karini925.github.io
Twitter: karini925
Location: NYC
Blog: https://scholar.google.com/citations?user=q5Hzub8AAAAJ&hl=en
Name: Karina
Type: User
Company: Columbia University
Bio: karini925.github.io
Twitter: karini925
Location: NYC
Blog: https://scholar.google.com/citations?user=q5Hzub8AAAAJ&hl=en
count DNA sequence reads in BAM files
wrapper and parser for bam readcount
Sequential regulatory activity predictions with deep convolutional neural networks.
Personal project to evaluate the effects of climate change on population health
Originally compiled this document for my current lab to share with incoming students and staff
A tool to find sequencing data and metadata from public databases.
Related to (Zaccaria and Raphael, 2018), the repository contains the simulated data, the results of all methods involved in the comparison, the results of HATCHet on the prostate and pancreas cancer datasets, and all data and analysis related to these last two cancer datasets.
Intro to ChIPseq using HPC
github pages for https://karini925.github.io/
Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
Review of literature relevant to cancer genomics and survival analysis
Code I have used throughout my Masters analyzing TCGA clinical and RNA-Seq datasets to discover lncRNA prognostic markers
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
🎓 Sharing course notes on all topics related to machine learning, NLP, and AI.
R script to prepare inputs for PyClone
An R package for studying mutational and structural variant signatures along clonal evolution in cancer.
making repo just to practice
A framework to infer mutational signatures in cancer over time
VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
Efficient viral genome assembly using RNA-seq reads
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.