Name: Yassine Kasmi
Type: User
Company: Thünen Institute
Bio: YASSINE KASMI, Researcher in bioinformatics, modeling et complex systems biology, and nanotherapy, I'm interested by the research in virology, microbiology,
Location: Bremerhaven
Blog: www.computational-biology.ma
Yassine Kasmi's Projects
Workshop materials for shotgun metagenomics
A simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding information
A curated list of awesome Bioinformatics libraries and software.
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)
DDBJ Fast Annotation and Submission Tool
Detailed description of 70 Essential Biodiversity Variables
A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
Single RNA-seq data analysis with R (Finland, May, 2019)
De novo assembler for single molecule sequencing reads using repeat graphs
Config files for my GitHub profile.
A catalogue of available long read sequencing data analysis tools
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Sequence correction provided by ONT Research
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
An R package for data analysis in microbial community ecology
Short introduction to command line NCBI blast tools
close-kin mark-recapture of rockfish off the coast of california
NCBI Prokaryotic Genome Annotation Pipeline
Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
Tutorials for R
wet lab protocols including sequencing library preparation
Materials for a class on reproducible research with R, Rstudio, and GitHub
MA5112 single cell RNA-Seq analysis
my scRNAseq analysis notes