kayla-morrell's Projects
Client for the Bioconductor AnnotationHub web resource
Transform public data resources into Bioconductor Data Structures
Quantify RNA-seq data using Salmon
Interfaces to terra-notebook-utils via basilisk, for Bioconductor/R users
Guidelines for Bioconductor package development and review
Automate package and project setup for Bioconductor packages
Biostar Q&A
R interface to the cellxgene data portal
The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version control with git, provides links to GitHub, gives Bioconductor advice, and lays out the process of submitting to Bioconductor.
Client to access ExperimentHub resources
Add resources to ExperimentHub
Representation and manipulation of genomic intervals
Usecases and benchmarking examples of GenomicSuperSignature R Package
Human Cell Atlas data discovery and retrieval
Use the 'hca' package to constructing count matrices and sample annotations from the Human Cell Atlas Data Portal
"Orchestrating Spatially Resolved Transcriptomics Analysis with Bioconductor" (OSTA) online book
Training Material for Community Reviewers
Quantify RNA-seq data using Salmon
This is a simple package / repo for testing the creation of AnVILPublish related GitHub Actions
R Interface to UniProt Web Services
Set up commonly used 📦 components