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Hi,
II am trying to compile the cylinder example, and I am facing the error:
/usr/bin/ld: cannot find -lparpack_MPI-gcc_rst
/usr/bin/ld: cannot find -larpack_gcc_rst
What is the recommended form of installation for PARPACK?
PSTAT example incomplete
The runtime parameters for PSTAT module are unused in the .par file.
KTH_Examples/phill_PSTAT/pstat.f
Lines 73 to 84 in 8c1f04b
No pipe.par file in pipe_gSyEM
Appears to be missing. I guess there should be one?
DNS_ext_cyl
Dear nek5000-developers:
Thanks for attentions. I want to run this example for comNS , could you help me to modify file/parameter.
Best wish to you,
Sincerely,
lixinjun
Warnings while restarting
I noticed these warnings on Tetralith about NSPCAL and LDIMT. I was able to reproduce them with the phill example. Do you know what could be wrong?
0 U-PRES gmres 8 9.8780E-05 1.0957E-03 1.0000E-04 2.6286E-02 6.0981E-02
1 volflow X 1.7594E+00 4.2479E-03 9.1533E+00 9.1575E+00
1 Fluid done 1.8000E-03 9.8721E-01
filt amp 0.0000 0.0000 0.4965 0.4986 0.5000 0.5011
filt trn 1.0000 1.0000 0.5035 0.5014 0.5000 0.4989
WARNING: restart file has a NSPCAL > LDIMT
read only part of the fld-data!
WARNING: NPSCAL read from restart file differs from
currently used NPSCAL!
FILE:
rs6phill0.f00002
[MSTEP] Checkpoint read:
Step 2, t= 2.0000000E-03, DT= 2.0000000E-04, C= 0.015 1.0502E+00 1.0502E+00
Solving for fluid
2 Hmholtz VELX 8 8.0729E-10 2.7106E+01 1.0000E-08
2 Hmholtz VELY 8 8.9924E-10 2.7403E+01 1.0000E-08
2 Hmholtz VELZ 5 2.2508E-09 4.1483E-02 1.0000E-08
2 U-PRES gmres 100 2.9601E-08 3.8750E-02 1.0000E-08 3.3662E-01 8.0159E-01
2 Hmholtz VELX 6 2.1799E-09 9.9984E-01 1.0000E-08
0 U-PRES gmres 5 8.8215E-05 7.5867E-04 1.0000E-04 1.7195E-02 3.8596E-02
2 volflow X 2.5288E+00 4.0895E-03 9.1534E+00 9.1575E+00
2 Fluid done 2.0000E-03 9.4041E-01
WARNING: restart file has a NSPCAL > LDIMT
read only part of the fld-data!
WARNING: NPSCAL read from restart file differs from
currently used NPSCAL!
FILE:
rs6phill0.f00003
[MSTEP] Checkpoint read:
Step 3, t= 2.2000000E-03, DT= 2.0000000E-04, C= 0.015 2.0295E+00 9.7930E-01
Solving for fluid
Note that I am on Nek5000 v17 and 1cdcac1 of this repo. The only changes I made were
[x_ashmo@n42 phill_STAT]$ git diff
diff --git a/phill_STAT/compile_script b/phill_STAT/compile_script
index dddc9f1..863491e 100755
--- a/phill_STAT/compile_script
+++ b/phill_STAT/compile_script
@@ -14,9 +14,9 @@ function error_quit {
#parameters
export CASE="phill"
-export SOURCE_ROOT="../../Nek5000"
-export FC="mpifort"
-export CC="mpicc"
+# export SOURCE_ROOT="../../Nek5000"
+export FC="mpiifort"
+export CC="mpiicc"
export PPLIST=""
export USR="frame.o mntrlog_block.o mntrlog.o mntrtmr_block.o mntrtmr.o rprm_block.o rprm.o io_tools_block.o io_tools.o"
USR+=" chkpoint.o chkpt_mstp.o map2D.o stat.o stat_IO.o math_tools.o"
diff --git a/phill_STAT/phill.par b/phill_STAT/phill.par
index 2b2c19a..1bb2aa6 100644
--- a/phill_STAT/phill.par
+++ b/phill_STAT/phill.par
@@ -4,7 +4,7 @@
[GENERAL]
stopAt = numSteps #endTime
#endTime = 30.0
-numSteps = 1003
+numSteps = 10
dt = -2.0e-04
timeStepper = bdf3 #char #steady
@@ -44,7 +44,7 @@ LOGLEVEL = 4 # Logging threshold for toolboxes
WALLTIME = 23:45 # Simulation wall time
#
[_CHKPOINT] # Runtime paramere section for checkpoint module
-READCHKPT = no # Restat from checkpoint
+READCHKPT = yes # Restat from checkpoint
CHKPFNUMBER = 1 # Restart file number
CHKPINTERVAL = 250 # Checkpiont saving frequency (number of time steps)
#Loaded modules:
Currently Loaded Modules:
1) Python/3.7.0-anaconda-5.3.0-extras-nsc1 9) impi/.2018.1.163 (H)
2) EasyBuild/3.8.1-nsca344df6 10) imkl/.2018.1.163 (H)
3) nsc-eb-scripts/1.0 11) intel/2018a
4) buildtool-easybuild/3.8.1-nsca344df6 12) git/2.19.3-nsc1-gcc-system
5) GCCcore/6.4.0 13) nodejs/12.15.0-nsc1-gcc-2019a-eb
6) binutils/.2.28 (H) 14) mpprun/4.1.2
7) icc/.2018.1.163-GCC-6.4.0-2.28 (H) 15) nsc/.1.1 (H,S)
8) ifort/.2018.1.163-GCC-6.4.0-2.28 (H)
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