kwb.orcid's Introduction

kwb.orcid

R package for checking ORCID use at KWB. It is a wrapper for the R package rorcid.

Installation

### Optionally: specify GitHub Personal Access Token (GITHUB_PAT)"                                                                             
### See here why this might be important for you:"                                                                                             
### https://kwb-r.github.io/kwb.pkgbuild/articles/install.html#set-your-github_pat"                                                            
                                                                                                                                      
# Sys.setenv(GITHUB_PAT = \"mysecret_access_token\")"                                                                                          
                                                                                                                                      
# Install package \"remotes\" from CRAN"                                                                                                       
"if (! require(\"remotes\")) {"                                                                                                                 
 install.packages(\"remotes\", repos = \"https://cloud.r-project.org\")"                                                                      
}                                                                                                                                             
                                                                                                                                        
# Install KWB package 'kwb.orcid' from GitHub"                                                                                                 
                                                                                                                                              
remotes::install_github("kwb-r/kwb.orcid")

Documentation

Release: https:://kwb-r.github.io/kwb.orcid

Development: https:://kwb-r.github.io/kwb.orcid/dev

kwb.orcid's People

Contributors

Watchers

kwb.orcid's Issues

Update ORCID in all Github R packages

repo	author	orcid
KWB-R/aquanes.report	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.base	[1] "Hauke Sonnenberg [email protected] [aut, cre] (0000-0001-9134-2871)"	0000-0001-9134-2871
KWB-R/kwb.code	[1] "Hauke Sonnenberg [email protected] [aut, cre] (0000-0001-9134-2871)"	0000-0001-9134-2871
KWB-R/kwb.datetime	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.db	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.default	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.demeau	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.dwa.m150	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.en13508.2	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.event	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.fakin	[1] "Hauke Sonnenberg [email protected] [aut, cre] (0000-0001-9134-2871)"	0000-0001-9134-2871
KWB-R/kwb.hantush	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.logger	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.monitoring	[1] "Hauke Sonnenberg [email protected] [aut, cre] (0000-0001-9134-2871)"	0000-0001-9134-2871
KWB-R/kwb.orcid	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.pkgbuild	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.pkgstatus	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.plot	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.qmra	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.resilience	[1] "Andreas Matzinger [email protected] [aut, cre] (0000-0001-5483-4594)"	0000-0001-5483-4594
KWB-R/kwb.test	[1] "Hauke Sonnenberg [email protected] [aut, cre]"	NA
KWB-R/kwb.umberto	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.utils	[1] "Hauke Sonnenberg [email protected] [aut, cre] (0000-0001-9134-2871)"	0000-0001-9134-2871
KWB-R/kwb.vs2dh	[1] "Michael Rustler [email protected] [aut, cre] (0000-0003-0647-7726)"	0000-0003-0647-7726
KWB-R/kwb.wtaq	[1] "Hauke Sonnenberg [email protected] [aut, cre]"

Table created with the following R code:

gh_repos <- kwb.pkgstatus::get_github_repos()

non_r_packages = c("kwb-r.github.io",
                   "fakin.blog", "fakin.doc", "HydroServerLite", "GeoSalz")

rpkgs <- gh_repos$full_name[!gh_repos$name %in% non_r_packages]

desc <- try(
  lapply(rpkgs, 
         function(x) {
  repo_url <- sprintf("https://raw.githubusercontent.com/%s/master/DESCRIPTION", x)
  tmpfile <- tempfile()
  download.file(url = repo_url, destfile = tmpfile, mode = "wb")
  desc <- desc::desc(file = tmpfile)
  
  authors_desc <- capture.output(desc$get_authors())
  index <- grep(pattern = "aut|cred", authors_desc)
  authors <- authors_desc[index]
  orcid_pattern <- "[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{4}"
  orcid <- stringr::str_extract(authors[index],pattern = orcid_pattern)
  data.frame(repo = x, 
                           author = authors, orcid = orcid,
                           stringsAsFactors = FALSE)
    }))

desc_list <- data.table::rbindlist(desc)

knitr::kable(desc_list)

get_kwb_orcids() should return a named vector

get_kwb_orcids() returns a vector of ORCIDs but whom do they belong to?

[1] "0000-0001-5483-4594" "0000-0001-9134-2871" "0000-0002-7436-8575" "0000-0003-0647-7726"

The elements should be named:

c(
  "Andreas  Matzinger" = "0000-0001-5483-4594", 
  "Hauke Sonnenberg" = "0000-0001-9134-2871", 
  "Wolfgang Seis" = "0000-0002-7436-8575", 
  "Michael Rustler" = "0000-0003-0647-7726"
)

Automatically run pkgdown::build_site() on Travis with pkgdown::deploy_site_github()

Use "gh_pages" branch for automatically creating documentation after each Travis build with pkgdown::deploy_site_github()

To do:

Remove "docs" folder in "master"
Create new branch "gh-pages" as described here
In Github: set "gh-pages" as source for deploying the website (instead of "master/docs")

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