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View Code? Open in Web Editor NEWMetaLogo: a heterogeneity-aware sequence logo generator and aligner
Home Page: http://metalogo.omicsnet.org
License: Apache License 2.0
MetaLogo: a heterogeneity-aware sequence logo generator and aligner
Home Page: http://metalogo.omicsnet.org
License: Apache License 2.0
Thanks for making MetaLogo! I'm using v1.1.3.
name=sample_A
metalogo \
--seq_file sampleA.fasta \
--seq_file_type fasta \
--sequence_type dna \
--task_name ${name} \
--output_name ${name} \
--clustalo_bin /programs/clustalo \
--fasttree_bin /programs/fasttree/FastTree \
--fasttreemp_bin /programs/fasttree/FastTreeMP
name=sample.A
metalogo \
--seq_file sampleA.fasta \
--seq_file_type fasta \
--sequence_type dna \
--task_name ${name} \
--output_name ${name} \
--clustalo_bin /programs/clustalo \
--fasttree_bin /programs/fasttree/FastTree \
--fasttreemp_bin /programs/fasttree/FastTreeMP
Traceback (most recent call last):
File "/home/miniconda3/envs/metalogo/bin/metalogo", line 8, in <module>
sys.exit(main())
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/MetaLogo/entry.py", line 310, in main
run_from_args(args)
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/MetaLogo/entry.py", line 62, in run_from_args
logogroup.savefig(f'{args.output_dir}/{args.output_name}')
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/MetaLogo/item.py", line 28, in savefig
self.ax.get_figure().savefig(filename,bbox_inches=bbox_inches)
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/matplotlib/figure.py", line 3058, in savefig
self.canvas.print_figure(fname, **kwargs)
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 2259, in print_figure
canvas = self._get_output_canvas(backend, format)
File "/home/miniconda3/envs/metalogo/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 2190, in _get_output_canvas
.format(fmt, ", ".join(sorted(self.get_supported_filetypes()))))
ValueError: Format 'a' is not supported (supported formats: eps, jpeg, jpg, pdf, pgf, png, ps, raw, rgba, svg, svgz, tif, tiff)
图片输出为其他格式,而不是png,希望能添加一个输出项,修改源代码找起来就麻烦了。感谢!
The metalogo help text (metalogo -h
) states that --logo_format
can be used to specify either png
or pdf
output. However, --logo_format pdf
is ignored, and a png
is created.
I'm using metalogo v1.1.3.
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