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Hi there ๐Ÿ‘‹

Curently

I'm a data scientist/bioinformatician ingeneer at INEM-Institut Necker Enfants Malades :)

I'm working with Single cell data analysis (data preprocessing, downstream analysis), in charge of the bioinformatics hub at the institute, working on cross-disciplinary projects and developing R Shiny App for genomics data for the institute.

Before

I was a Data Scientist at Oncodesign Precision Medicine in Dijon, France. My work consisted of implementing and evaluating novel interpretable machine learning approaches to improve the identification of new therapeutic targets for patients resistance to anti-cancer treatment using multi-omics data based on ๐—ข๐—ป๐—ฐ๐—ผ๐—ฆ๐—ก๐—œ๐—ฃ๐—˜ยฎ ๐—ฝ๐—ฟ๐—ผ๐—ท๐—ฒ๐—ฐ๐˜. For more details, please check my LinkedIn profile.

I am graduated with a Master's degree in bioinformatics and multi-Omics engineering from the University of Paris-Est Crรฉteil. In this course I learned about bioinformatics and its applications in the health field. My different trainings have allowed me to have a wide range of knowledge in the field of health and environment as well as an integrative vision of different fields for health (One Health concept).

I am passionate about artificial intelligence, especially machine learning and it's application on cancer.

Links

Programming languages and tools

PYTHON R LINUX GITHUB UBUNTU Shell Script MARKDOWN MySQL Octave image scikit-learn TensorFlow PyTorch Snakemake

Data skills

  • Omics data
    • Multimodal data (Rnaseq, exome, single Cell etc)
    • Longitudinal data
    • Data integration
    • Hetegenous data
  • Clinical data
  • Medical Images

Connect

Feel free to contact me for any questions, I would be delighted to help.

LinkeIn Twitter

Github stats

LAMINE TOURE's Projects

dcai-lab icon dcai-lab

Lab assignments for Introduction to Data-Centric AI, MIT IAP 2023 ๐Ÿ‘ฉ๐Ÿฝโ€๐Ÿ’ป

explainable-ai icon explainable-ai

In this repository you will fine explainability of machine learning models.

grpregoverlap icon grpregoverlap

Regularization paths of linear, logistic, Poisson, or Cox models with overlapping grouped covariates

lime icon lime

Lime: Explaining the predictions of any machine learning classifier

mogonet icon mogonet

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedical applications.

netics-multi-omics icon netics-multi-omics

NetICS: network-based integration of multi-omics data for prioritizing cancer genes

omivae icon omivae

End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.

shapash icon shapash

๐Ÿ”… Shapash makes Machine Learning models transparent and understandable by everyone

streamlit icon streamlit

Streamlit App with restoration images algorithm (on going)

tutorial icon tutorial

Tutorials on machine learning, artificial intelligence in general and in biomedical research.

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