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TiMBL implements several memory-based learning algorithms.

Home Page: https://languagemachines.github.io/timbl

License: GNU General Public License v3.0

Shell 0.76% C++ 97.87% Makefile 0.28% M4 0.82% Dockerfile 0.26%
machine-learning classification learning-algorithm timbl ib1 igtree decision-tree k-nearest-neighbours nearest-neighbours knn

timbl's Issues

Timbl Installation Error

Hi!

I'm trying to install frog on ubuntu 16.04, which requires timbl. When I'm installing timbl, I run into a problem. Configuration works fine, but during compilation:

/usr/local/lib/libticcutils.so: undefined reference to `boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > > const&)'
/usr/local/lib/libticcutils.so: undefined reference to `boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)'
collect2: error: ld returned 1 exit status
Makefile:684: recipe for target 'timbl' failed
make[2]: *** [timbl] Error 1
make[2]: Leaving directory '/mnt/b5320167-5dbd-4498-bf34-173ac5338c8d/Tools/timbl-6.4.10/src'
Makefile:465: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/mnt/b5320167-5dbd-4498-bf34-173ac5338c8d/Tools/timbl-6.4.10'
Makefile:374: recipe for target 'all' failed
make: *** [all] Error 2

I'm attaching the full report as "log".

I've used the latest ticcutils-0.17 release, and I'm trying to install frog-0.13.9. Timbl version that is failing is timbl-6.4.10.

Thanks for any suggestions about what might be causing this problem!

Simon Suster

@SimonSuster : ADDED as a GitHub issue.

check works fine, but then says no such file found. Can't find dimin file.

Getting this error, any suggestions please:

 flipswitch@devcenter  /tmp/timbl   master ?  make check
Making check in src
make[1]: Entering directory '/tmp/timbl/src'
make  simpletest
make[2]: Entering directory '/tmp/timbl/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I../include  -std=c++11  -g -O2 -fopenmp -I/usr/include/libxml2 -fopenmp -I/usr/local/include -MT simpletest.o -MD -MP -MF .deps/simpletest.Tpo -c -o simpletest.o simpletest.cxx
mv -f .deps/simpletest.Tpo .deps/simpletest.Po
/bin/bash ../libtool  --tag=CXX   --mode=link g++ -std=c++11  -g -O2 -fopenmp -I/usr/include/libxml2 -fopenmp -I/usr/local/include   -o simpletest simpletest.o libtimbl.la -lxml2 -L/usr/local/lib -lticcutils
libtool: link: g++ -std=c++11 -g -O2 -fopenmp -I/usr/include/libxml2 -fopenmp -I/usr/local/include -o .libs/simpletest simpletest.o  ./.libs/libtimbl.so -lxml2 -L/usr/local/lib /usr/local/lib/libticcutils.so -pthread -fopenmp
make[2]: Leaving directory '/tmp/timbl/src'
make  check-TESTS
make[2]: Entering directory '/tmp/timbl/src'
make[3]: Entering directory '/tmp/timbl/src'
PASS: simpletest
============================================================================
Testsuite summary for timbl 6.4.9
============================================================================
# TOTAL: 1
# PASS:  1
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[3]: Leaving directory '/tmp/timbl/src'
make[2]: Leaving directory '/tmp/timbl/src'
make[1]: Leaving directory '/tmp/timbl/src'
Making check in include
make[1]: Entering directory '/tmp/timbl/include'
Making check in timbl
make[2]: Entering directory '/tmp/timbl/include/timbl'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/tmp/timbl/include/timbl'
make[2]: Entering directory '/tmp/timbl/include'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/tmp/timbl/include'
make[1]: Leaving directory '/tmp/timbl/include'
Making check in demos
make[1]: Entering directory '/tmp/timbl/demos'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/tmp/timbl/demos'
Making check in docs
make[1]: Entering directory '/tmp/timbl/docs'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/tmp/timbl/docs'
Making check in m4
make[1]: Entering directory '/tmp/timbl/m4'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/tmp/timbl/m4'
make[1]: Entering directory '/tmp/timbl'
make[1]: Leaving directory '/tmp/timbl'
 flipswitch@devcenter  /tmp/timbl   master ?  timbl -v
timbl: error while loading shared libraries: libtimbl.so.4: cannot open shared object file: No such file or directory

Fixed the error by changing the so dynamic linking conf file:

 flipswitch@devcenter  /tmp/timbl   master ?  cat /etc/ld.so.conf
include /etc/ld.so.conf.d/*.conf
 flipswitch@devcenter  /tmp/timbl   master ?  vi /etc/ld.so.conf
 flipswitch@devcenter  /tmp/timbl   master ?  sudo vi /etc/ld.so.conf
flipswitch@devcenter  /tmp/timbl   master ?  cat /etc/ld.so.conf
include /etc/ld.so.conf.d/*.conf
/usr/local/lib
 flipswitch@devcenter  /tmp/timbl   master ?  timbl -v               
TiMBL 6.4.9 (c) CLST/ILK/CLIPS 1998 - 2017.
Tilburg Memory Based Learner
Centre for Language and Speech Technology, Radboud University
Induction of Linguistic Knowledge Research Group, Tilburg University
CLiPS Computational Linguistics Group, University of Antwerp
Tue Feb 21 21:40:45 2017

option-error: missing value for option ''v'
usage:  timbl -f data-file {-t test-file}
or see: timbl -h
        for all possible options

Now, can't file dimin.train

[lintian warnings] manpage-has-errors-from-man

W: timbl: manpage-has-errors-from-man usr/share/man/man1/timbl.1.gz 305: warning: numeric expression expected (got `o')                                                                        
N:                                                                                                                                                                                             
N:    This man page provokes warnings or errors from man.                                                                                                                                      
N:                                                                                                                                                                                             
N:    "cannot adjust" or "can't break" are trouble with paragraph filling,                                                                                                                     
N:    usually related to long lines. Adjustment can be helped by left
N:    justifying, breaks can be helped with hyphenation, see "Manipulating
N:    Filling and Adjusting" and "Manipulating Hyphenation" in the groff
N:    manual (see info groff).                                                                                     
N:                
N:    "can't find numbered character" usually means latin1 etc in the input,
N:    and this warning indicates characters will be missing from the output.
N:    You can change to escapes like \[:a] described on the groff_char man
N:    page.                              
N:
N:    Other warnings are often formatting typos, like missing quotes around a
N:    string argument to .IP. These are likely to result in lost or malformed
N:    output. See the groff_man (or groff_mdoc if using mdoc) man page for
N:    information on macros.                                                 
N:                                                                       
N:    This test uses man's --warnings option to enable groff warnings that
N:    catch common mistakes, such as putting . or ' characters at the start of
N:    a line when they are intended as literal text rather than groff   
N:    commands. This can be fixed either by reformatting the paragraph so that
N:    these characters are not at the start of a line, or by adding a
N:    zero-width space (\&) immediately before them.
N:
N:    At worst, warning messages can be disabled with the .warn directive, see
N:    "Debugging" in the groff manual.
N:
N:    Lintian also stricter in regards to declaring manpage preprocessors.
N:
N:    To test this for yourself you can use the following command:
N:     LC_ALL=en_US.UTF-8 MANROFFSEQ='' MANWIDTH=80 \
N:            man --warnings -E UTF-8 -l -Tutf8 -Z <file> >/dev/null
N:
N:    Refer to the groff_man(7) manual page and the groff_mdoc(7) manual page
N:    for details.
N:
N:    Severity: normal, Certainty: certain

also:

I: timbl: spelling-error-in-manpage usr/share/man/man1/timbl.1.gz distibutions distributions
I: timbl: spelling-error-in-manpage usr/share/man/man1/timbl.1.gz SYNOPSYS SYNOPSIS
I: libtimbl4: spelling-error-in-binary usr/lib/libtimbl.so.4.0.1 occurence occurrence
I: libtimbl4: spelling-error-in-binary usr/lib/libtimbl.so.4.0.1 erronous erroneous

No proper exit code after error

I get the error reading an instancebase(-i option) without a testfile (-t option) is useless (and rightly so), but timbl exits with 0 instead of a proper error code... (and therefore LuigiNLP doesn't realize it failed)

add a parameter to select the N best features

For some tasks, with a lot of features, it might be handy to let Timbl select the top N features, based on the current weight, and use only those to build the tree. Also an implicit -mI for all the other features.

e.g a --cutoff 1000, would select the 1000 'best ranked' features. Assuming more than 1000 are available :)

comment welcome....

installation problems

Hi,
After installing ticcutils successfully, I met some problems in installing timbl.
It seems that I have installed all dependencies listed; however, after implementing "make", I have got some errors like the following:
make[2]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12/demos'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12/demos'
Making all in docs
make[2]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12/docs'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12/docs'
Making all in m4
make[2]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12/m4'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12/m4'
make[2]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12'
make[2]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12'
make[1]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12'
% make install
Making install in src
make[1]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12/src'
make[2]: Entering directory '/home/kun/Software/entropy/timbl-6.4.12/src'
/bin/mkdir -p '/usr/local/lib'
/bin/bash ../libtool --mode=install /usr/bin/install -c libtimbl.la '/usr/local/lib'
libtool: install: /usr/bin/install -c .libs/libtimbl.so.4.0.1 /usr/local/lib/libtimbl.so.4.0.1
/usr/bin/install: cannot remove '/usr/local/lib/libtimbl.so.4.0.1': Permission denied
Makefile:584: recipe for target 'install-libLTLIBRARIES' failed
make[2]: *** [install-libLTLIBRARIES] Error 1
make[2]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12/src'
Makefile:1006: recipe for target 'install-am' failed
make[1]: *** [install-am] Error 2
make[1]: Leaving directory '/home/kun/Software/entropy/timbl-6.4.12/src'
Makefile:465: recipe for target 'install-recursive' failed

Who would like to help me solve the problem.

Error while compiling timbl-6.4.12

On CentOS 7. Getting the following error...

/bin/sh ../libtool --tag=CXX --mode=link g++ -std=c++11 -W -Wall -O3 -g -pedantic -g -O2 -fopenmp -I/usr/include/libxml2 -fopenmp -I/usr/local/include -o timbl Timbl.o libtimbl.la -lxml2 -L/usr/local/lib -lticcutils
libtool: link: g++ -std=c++11 -W -Wall -O3 -g -pedantic -g -O2 -fopenmp -I/usr/include/libxml2 -fopenmp -I/usr/local/include -o .libs/timbl Timbl.o ./.libs/libtimbl.so -lxml2 -L/usr/local/lib /usr/local/lib/libticcutils.so -pthread -fopenmp -Wl,-rpath -Wl,/usr/local/lib
/usr/local/lib/libticcutils.so: undefined reference to boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > const&)' /usr/local/lib/libticcutils.so: undefined reference to boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits, std::allocator > >, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::__cxx11::basic_string<char, std::char_traits, std::allocator > > > >, boost::regex_traits<char, boost::cpp_regex_traits > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits > > const&, boost::regex_constants::_match_flags)'
collect2: error: ld returned 1 exit status
make[2]: *** [timbl] Error 1
make[2]: Leaving directory /tmp/timbl-6.4.11/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory /tmp/timbl-6.4.11'
make: *** [all] Error 2

Any ideas on how to resolve this?

Thanks!
Lou

Documentation out of date

Documentation still refers to the binary as Timbl instead of timbl. Also, I think it should be shipped inside this repo, currently we still refer to a pdf on a server in Tilburg.

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