Using hierfstat to get per population overall FIS values
This script will take FSTAT files as input. If you want to do similar stuff with vcftools please see: https://github.com/laninsky/GBS_SNP_filter/tree/master/utilities
Also note the script here will analyses populations one by one - you may want them analyzed together if you are comparing He and Ho. The code at https://github.com/laninsky/GBS_SNP_filter/tree/master/utilities will also do this.
v0.0 version published in Robin TBD.
This code wouldn't be possible without:
R: R Core Team. 2015. R: A language and environment for statistical computing. URL http://www.R-project.org/. R Foundation for Statistical Computing, Vienna, Austria. https://www.r-project.org/