larcv python script crashes when larlite is configured about larcv HOT 8 CLOSED

Erez has this problem w/ LArLite and ROOT 06.04.10

`In file included from input_line_42:23:
In file included from /Users/erezcohen/larlite/core/DataFormat/ChStatus.h:22:
In file included from /Users/erezcohen/larlite/core/DataFormat/data_base.h:18:
/Users/erezcohen/larlite/core/Base/DataFormatConstants.h:116:39: error: use of undeclared identifier
      'kDATA_TYPE_MAX'
    const std::string kDATA_TREE_NAME[kDATA_TYPE_MAX] = {
                                      ^
In file included from input_line_42:23:
In file included from /Users/erezcohen/larlite/core/DataFormat/ChStatus.h:22:
In file included from /Users/erezcohen/larlite/core/DataFormat/data_base.h:19:
/Users/erezcohen/larlite/core/DataFormat/larlite_dataformat_utils.h:51:59: error: no member named 'kDATA_TYPE_MAX'
      in namespace 'larlite::data'
    product_id(const unsigned short type = larlite::data::kDATA_TYPE_MAX,
                                           ~~~~~~~~~~~~~~~^
In file included from input_line_42:23:
In file included from /Users/erezcohen/larlite/core/DataFormat/ChStatus.h:22:
/Users/erezcohen/larlite/core/DataFormat/data_base.h:36:43: error: no member named 'kDATA_TYPE_MAX' in namespace
      'larlite::data'
    data_base(unsigned short type = data::kDATA_TYPE_MAX);
                                    ~~~~~~^
/Users/erezcohen/larlite/core/DataFormat/data_base.h:66:45: error: no member named 'kDATA_TYPE_MAX' in namespace
      'larlite::data'
    output_base(unsigned short type = data::kDATA_TYPE_MAX,
                                      ~~~~~~^
/Users/erezcohen/larlite/core/DataFormat/data_base.h:170:47: error: no member named 'kDATA_TYPE_MAX' in namespace
      'larlite::data'
    event_base(unsigned short    type = data::kDATA_TYPE_MAX,
                                        ~~~~~~^
In file included from input_line_42:23:
/Users/erezcohen/larlite/core/DataFormat/ChStatus.h:67:66: error: no member named 'kChStatus' in namespace
      'larlite::data'
    event_chstatus(std::string name="noname") : event_base(data::kChStatus,name) { clear_data();}
                                                           ~~~~~~^
In file included from input_line_42:42:
/Users/erezcohen/larlite/core/DataFormat/Vertex.h:30:32: error: no member named 'kVertex' in namespace
      'larlite::data'
    vertex() : data_base(data::kVertex) {clear_data();}
                         ~~~~~~^
/Users/erezcohen/larlite/core/DataFormat/Vertex.h:71:64: error: no member named 'kVertex' in namespace
      'larlite::data'
    event_vertex(std::string name="noname") : event_base(data::kVertex,name) {clear_data();}
                                                         ~~~~~~^
Error in <TInterpreter::AutoParse>: Error parsing payload code for class larcv::IOManager with content:


#ifndef G__VECTOR_HAS_CLASS_ITERATOR
  #define G__VECTOR_HAS_CLASS_ITERATOR 1
#endif

#define _BACKWARD_BACKWARD_WARNING_H
#include "AABox2D.h"
#include "ChStatus.h"
#include "DataFormatTypes.h"
#include "DataFormatUtil.h"
#include "DataProductFactory.h"
#include "EventBase.h"
#include "EventChStatus.h"
#include "EventImage2D.h"
#include "EventPixel2D.h"
#include "EventROI.h"
#include "IOManager.h"
#include "Image2D.h"
#include "ImageMeta.h"
#include "LineSegment2D.h"
#include "Pixel2D.h"
#include "Pixel2DCluster.h"
#include "ProductMap.h"
#include "ROI.h"
#include "UtilFunc.h"
#include "Vector2D.h"
#include "Vertex.h"

#undef  _BACKWARD_BACKWARD_WARNING_H

    [NORMAL]  <IOManager::prepare_input> Opening a file in READ mode: /Users/erezcohen/Desktop/uBoone/EXTBNB_DATA/larcv_files/larcv_9131runs_multipscore0.95_595evts_03082016.root
    [NORMAL]  <IOManager::initialize> Prepared input with 595 entries...
# self.dm
# Navigation box
No OpenCV. Disabling.`

from larcv.

Above problem is fixed by this commit: 6eea252

In general we should try "from larcv import larcv" and "from larlite import larlite" instead of "from ROOT import larcv" or "from ROOT import larlite" because auto-loading seems not correctly done in an order.

from larcv.

git pulled on larlite , rebuilt.
git pulled on LArCV, removed build folder, rebuilt.
I get the following on nudot:

taritree@nunet:~/working/larbys/LArCV/mac$ python view_rgb.py /mnt/raid0/taritree/v0/training_sample/validation_sample_overlay_v0.root
Xlib: extension "XInputExtension" missing on display ":5.0".
In file included from input_line_41:40:
/home/taritree/working/larlite/core/Base/UtilFunc.h:8:27: error: no member named
'kDATA_TREE_NAME' in namespace 'larlite::data'
return larlite::data::kDATA_TREE_NAME[t];
~~~~~~~~~~~~~~~^
Error in TInterpreter::AutoParse: Error parsing payload code for class larcv::IOManager with content:

#ifndef G__VECTOR_HAS_CLASS_ITERATOR
#define G__VECTOR_HAS_CLASS_ITERATOR 1
#endif

#define _BACKWARD_BACKWARD_WARNING_H
#include "AABox2D.h"
#include "ChStatus.h"
#include "DataFormatTypes.h"
#include "DataFormatUtil.h"
#include "DataProductFactory.h"
#include "EventBase.h"
#include "EventChStatus.h"
#include "EventImage2D.h"
#include "EventPixel2D.h"
#include "EventROI.h"
#include "Image2D.h"
#include "ImageMeta.h"
#include "IOManager.h"
#include "LineSegment2D.h"
#include "Pixel2DCluster.h"
#include "Pixel2D.h"
#include "ProductMap.h"
#include "ROI.h"
#include "UtilFunc.h"
#include "Vector2D.h"
#include "Vertex.h"

#undef _BACKWARD_BACKWARD_WARNING_H

[NORMAL]  <IOManager::prepare_input> Opening a file in READ mode: /mnt/raid0/taritree/v0/training_sample/validation_sample_overlay_v0.root

In file included from input_line_76:29:
/home/taritree/working/larbys/LArCV/core/DataFormat/EventImage2D.h:32:5: error: constructor
for 'larcv::EventImage2D' must explicitly initialize the member '_image_v' which does
not have a default constructor
EventImage2D(){}
^
/home/taritree/working/larbys/LArCV/core/DataFormat/EventImage2D.h:60:33: note: member is
declared here
std::vectorlarcv::Image2D _image_v;
^
/usr/include/c++/4.8/bits/stl_vector.h:210:11: note: 'std::vector<larcv::Image2D,
std::allocatorlarcv::Image2D >' declared here
class vector : protected _Vector_base<_Tp, _Alloc>
^
In file included from input_line_76:40:
/home/taritree/working/larlite/core/Base/UtilFunc.h:8:27: error: no member named
'kDATA_TREE_NAME' in namespace 'larlite::data'
return larlite::data::kDATA_TREE_NAME[t];
~~~~~~~~~~~~~~~^
In file included from input_line_7:1:
In file included from /home/taritree/software/root/include/Rtypes.h:223:
In file included from /home/taritree/software/root/include/TGenericClassInfo.h:15:
In file included from /usr/include/c++/4.8/vector:69:
/usr/include/c++/4.8/bits/vector.tcc:168:28: error: no member named '_S_always_equal' in
'__gnu_cxx::__alloc_traitsstd::allocator<larcv::Image2D >'
if (!_Alloc_traits::_S_always_equal()
^
/home/taritree/working/larbys/LArCV/core/DataFormat/EventImage2D.h:55:15: note: in
instantiation of member function 'std::vector<larcv::Image2D,
std::allocatorlarcv::Image2D >::operator=' requested here
{ image_v = std::move(_image_v); }
^
Error in TInterpreter::AutoParse: Error parsing payload code for class larcv::ChStatus with content:

#ifndef G__VECTOR_HAS_CLASS_ITERATOR
#define G__VECTOR_HAS_CLASS_ITERATOR 1
#endif

#define _BACKWARD_BACKWARD_WARNING_H
#include "AABox2D.h"
#include "ChStatus.h"
#include "DataFormatTypes.h"
#include "DataFormatUtil.h"
#include "DataProductFactory.h"
#include "EventBase.h"
#include "EventChStatus.h"
#include "EventImage2D.h"
#include "EventPixel2D.h"
#include "EventROI.h"
#include "Image2D.h"
#include "ImageMeta.h"
#include "IOManager.h"
#include "LineSegment2D.h"
#include "Pixel2DCluster.h"
#include "Pixel2D.h"
#include "ProductMap.h"
#include "ROI.h"
#include "UtilFunc.h"
#include "Vector2D.h"
#include "Vertex.h"

#undef _BACKWARD_BACKWARD_WARNING_H

Fatal: ! (prop&kIsClass) && "Impossible code path" violated at line 480 of `/home/taritree/software/root/io/io/src/TGenCollectionProxy.cxx'
aborting

Thread 3 (Thread 0x7f994d7fe700 (LWP 4237)):
#0 sem_wait () at ../nptl/sysdeps/unix/sysv/linux/x86_64/sem_wait.S:85
#1 0x00000000004f4850 in ?? ()
#2 0x000000000049968d in PyEval_EvalFrameEx ()
#3 0x00000000004a1c9a in ?? ()
#4 0x0000000000505f96 in PyObject_Call ()
#5 0x000000000049b07a in PyEval_EvalFrameEx ()
#6 0x0000000000499ef2 in PyEval_EvalFrameEx ()
#7 0x0000000000499ef2 in PyEval_EvalFrameEx ()
#8 0x00000000004a1c9a in ?? ()
#9 0x00000000004dfe94 in ?? ()
#10 0x00000000004dc9cb in PyEval_CallObjectWithKeywords ()
#11 0x0000000000588b12 in ?? ()
#12 0x00007f999138f184 in start_thread (arg=0x7f994d7fe700) at pthread_create.c:312
#13 0x00007f99910bc37d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:111

Thread 2 (Thread 0x7f994ffff700 (LWP 4249)):
#0 0x00007f99910aefdd in poll () at ../sysdeps/unix/syscall-template.S:81
#1 0x00007f98bf589248 in ?? () from /lib/x86_64-linux-gnu/libusb-1.0.so.0
#2 0x00007f999138f184 in start_thread (arg=0x7f994ffff700) at pthread_create.c:312
#3 0x00007f99910bc37d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:111

Thread 1 (Thread 0x7f999179c740 (LWP 4199)):
#0 0x00007f9991082a59 in libc_waitpid (pid=4252, stat_loc=stat_loc
entry=0x7ffc742f1540, options=options
entry=0) at ../sysdeps/unix/sysv/linux/waitpid.c:40
#1 0x00007f9991008232 in do_system (line=) at ../sysdeps/posix/system.c:148
#2 0x00007f98ed25ec93 in TUnixSystem::StackTrace() () from /home/taritree/software/root/lib/libCore.so
#3 0x00007f98ed1a4301 in DefaultErrorHandler(int, bool, char const, char const) () from /home/taritree/software/root/lib/libCore.so
#4 0x00007f98ed1a3d4a in ErrorHandler () from /home/taritree/software/root/lib/libCore.so
#5 0x00007f98ed1a41a2 in Fatal(char const_, char const_, ...) () from /home/taritree/software/root/lib/libCore.so
#6 0x00007f98ecc2113c in TGenCollectionProxy::Value::Value(std::string const&, bool) () from /home/taritree/software/root/lib/libRIO.so
#7 0x00007f98ecc21376 in R__CreateValue(std::string const&, bool) () from /home/taritree/software/root/lib/libRIO.so
#8 0x00007f98ecc219cf in TGenCollectionProxy::InitializeEx(bool) () from /home/taritree/software/root/lib/libRIO.so
#9 0x00007f98ecc1f2d7 in TGenCollectionProxy::GetCollectionType() const () from /home/taritree/software/root/lib/libRIO.so
#10 0x00007f98ed255a58 in TStreamerSTL::TStreamerSTL(char const_, char const_, int, char const_, TVirtualCollectionProxy const&, bool) () from /home/taritree/software/root/lib/libCore.so
#11 0x00007f98eccca01c in TStreamerInfo::Build() () from /home/taritree/software/root/lib/libRIO.so
#12 0x00007f98ed21fe51 in TClass::GetStreamerInfo(int) const () from /home/taritree/software/root/lib/libCore.so
#13 0x00007f98ecccdd9a in TStreamerInfo::BuildOld() () from /home/taritree/software/root/lib/libRIO.so
#14 0x00007f98ed21fd8d in TClass::GetStreamerInfo(int) const () from /home/taritree/software/root/lib/libCore.so
#15 0x00007f98ec896bd8 in TBranchElement::InitInfo() () from /home/taritree/software/root/lib/libTree.so
#16 0x00007f98ec899153 in TBranchElement::SetAddress(void_) () from /home/taritree/software/root/lib/libTree.so
#17 0x00007f98ec8ae541 in TChain::LoadTree(long long) () from /home/taritree/software/root/lib/libTree.so
#18 0x00007f98ec8acc06 in TChain::GetEntries() const () from /home/taritree/software/root/lib/libTree.so
#19 0x00007f9934013592 in larcv::IOManager::prepare_input (this=this
entry=0x6522ae0) at IOManager.cxx:350
#20 0x00007f9934016e3f in larcv::IOManager::initialize (this=0x6522ae0) at IOManager.cxx:145
#21 0x00007f99821eb036 in ?? ()
#22 0x0000000000000000 in ?? ()
Aborted (core dumped)

from larcv.

went into mac/ changed init.py

changed

import ROOT
from ROOT import larcv

to

import ROOT 
from larcv import larcv

fixed. will check in change to develop.

from larcv.

fixed in c3a4bdb

proof that viewer works on nudot:

from larcv.

list of everywhere 'from ROOT import larcv' occurs:

taritree@nunet:~/working/larbys/LArCV$ grep -iIr 'from ROOT import larcv' *
app/PMTWeights/test_pmtweights.py:from ROOT import larcv, std
app/PMTWeights/foo.py:from ROOT import larcv, std
app/SmallSampleMaker/run.py:from ROOT import larcv, std
app/CalibADC/run.py:from ROOT import larcv, std
app/tests/test_matrixmult.py:from ROOT import larcv
app/tests/test_eltwisemult.py:from ROOT import larcv
app/ImageAna/run.py:from ROOT import larcv, std
core/DataFormat/test/test_both.py:from ROOT import larcv
mac/dump_pixels.py:from ROOT import larcv
mac/dump_chstatus.py:from ROOT import larcv
mac/dump_bb.py:from ROOT import larcv
mac/dump_all_bb.py:from ROOT import larcv
mac/mac/concat_roi.py:from ROOT import larcv
python/larcv/init.py:from ROOT import larcv

i'm going to change them all.

from larcv.

THANK YOU!!!

from larcv.

done: 734a147

assuming this fixes the error forever and closing the issue.

from larcv.