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detectionevaluationj

fiji-qualiannotations

Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization

fiji-roiclicktools

Fiji Toolbar tool with Roi that perform measurements, are added to Manager and auto next slice

fiji.github.io

Website

haar-cascade-nms

OpenCV Haar cascade with non-maxima suppression

hdf5_vibez

HDF5 plugin for ImageJ and Fiji.

hello-github-actions

ij-opencv

Library allowing the use of OpenCV in ImageJ by providing converter functions

imagej1

Wayne Rasband's ImageJ 1.x repository, updated once a night. To develop this code, use https://github.com/imagej/ImageJA.

intensityprofiletoolset-imagej

Toolset providing an interactive X/Y line profile tools and horizontal/vertical profile

interactive-embedding-kidney

This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.

jythonpackage

Wrapping jython macro script into a jar

knimetgmm_reloaded

Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).

manual_tracking

maskfromrois-fiji

Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.

ni-usb6008-analog-digital-outputs

This script allows to control analog and digital outputs of a NI-USB-6008 from National Instrument using the PyDAQmx module

objectdetectionexamples-imagej.js

Example of ImageJ macros for object-localization

roigrouptable

Helper plugin providing a table to facilitate the setting of the names associated to the Roi-group integer indexes in Fiji

scikit-image

Image processing in Python

tensorflowtutorial

usb-3101--measurementcomputing

Simple Python script to control analog and digital outputs for a USB-3101 from Measurement Computing

w_biaflow-example-cellseg