Comments (1)
chklopp
commented on July 30, 2024
After after a second check the drop in kmer coverage is also found with HiFi reads. Still I do not understand why the assembly metrics are so low : hifiasm is using a very low number of reads for the assembly, this can be seen in the gfa coverage values
h1tg000001l 114415 6
h1tg000002l 1935040 3
h1tg000003l 485308 3
h1tg000004l 113763 0
h1tg000005l 54120 0
h1tg000006l 82359 0
h1tg000007l 3376377 2
h1tg000008l 505683 2
h1tg000009l 1826044 2
h1tg000010l 4045620 2
h1tg000011l 151854 1
h1tg000012l 172642 0
h1tg000013l 75530 0
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