RUST_BACKTRACE=1 about herro HOT 3 OPEN

Additionally, in the result file “cyc.cor.herro.fasta”, there was already a few partial results, but once the core.* file was generated, and no further output.

from herro.

Hi,

Are you sure that generated batches (used by --read-alns) are generated with the same reads (filtered reads)? Getting this error at this stage would suggest that there tlen/qlen in *.oec.zst is different than the real length.

I will try to rewrite the code to show this error while parsing.

Best regards,
Dominik Stanojevic

from herro.

hi
yes, i confirmed that it's the same input file as follow:
seqkit seq -n -i cyc.cor.fastq.gz > cyc.cor.fastq.ids
sh create_batched_alignments.sh cyc.cor.fastq.gz cyc.cor.fastq.ids 12 batches_of_alignments

The issue could arise from insufficient memory for the task or an excessive number of threads?

thank you.

from herro.