Name: Lucas Czech
Type: User
Company: Globe Institute, Section for GeoGenetics
Bio: Postdoc in bioinformatics :seedling: and computer scientist :octocat: working on inter-disciplinary ways to save the planet :earth_africa:
Twitter: LucCzech
Location: University of Copenhagen, Denmark
Blog: http://lucas-czech.de
Lucas Czech's Projects
Conda recipes for the bioconda channel.
Command line parser for C++11
Some sample files for the CoME2017 course to play around with.
Code repository for the dinophyte DNA in tropical rain forest soils paper
Flat containers for C++
A toolkit for analyzing and visualizing phylogenetic (placement) data
A library for working with phylogenetic and population genetic data.
Scripts and Tests for the Application Note of genesis and gappa
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
Code for tests and benchmarks of our paper on grenedalf
Scripts and analyses for the GrENE-net pilot dataset
Snakemake playground for selection analyses in evolve & resequence experiments
Calculate haplotype-derived allele frequencies for pool-seq samples
Custom compression for CRAM and others.
C++ support in Atom
My syntax scheme for atom.
Minimal encoding of canonical k-mers
Snakemake pipeline to run phylogenetic tree inferences
new codebase of the PaPaRa algorithm
Accompanying code repository with scripts, programs and data for our papers.
Programming Practical of the Exelicis Lab using the Phylogenetic Likelihood Library
Pool-HMM mirror with Mac support (versions >= 1.4.3)
Forked from https://sourceforge.net/p/popoolation/
Forked from https://sourceforge.net/p/popoolation2/
Snakemake pipeline for phylogenetic placement of metagenomic sequences
This is the development home of the Snakemake wrapper repository, see
A fast, memory efficient hash map for C++