Comments (1)
See Martin Morgan's comment at Bioconductor/Contributions#9 (comment). Which is why now SummarizedExperiment
is in the Depends:
field.
from recount.
Related Issues (20)
- column names of colData of RangedSummarizedExperiment inconsistent? HOT 3
- Search by GSE HOT 5
- BiocFileCache integration HOT 2
- Is additional normalization needed when compare counts between two different projects, like TCGA and GTEx? HOT 1
- Remove package installation code HOT 3
- Helper function for loading multiple rse files HOT 1
- Download rse for a tissue from GTEx/TCGA HOT 1
- How to get annotation for exon? HOT 1
- NA's in rse_tx_brain HOT 3
- inconsistent pheno tables between gene and transcript datasets HOT 1
- rse_gene/rse_exon have too many counts by several orders of magnitude? HOT 1
- Results for TCGA samples having all "NA" values HOT 1
- [BUG] Severe Slowdown due to rowRanges 'symbol' column in RSE datasets HOT 2
- expressed_regions() is not working with the new IDIES and AWS bigWig file locations HOT 5
- package โrecountโ is not available for Bioconductor version '3.19' HOT 5
- snaptron_query NA coercion error HOT 3
- POU5F1 and genes on more than one chromosome are currently not in recount HOT 1
- Transcript level matrix for thousands of experiments HOT 1
- TCGA metadata issue in column age_at_initial_pathologic_diagnosis HOT 2
- Plot base level coverage HOT 9
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