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vein_segmentation's Introduction

Usage

  1. Clone the repository.
git clone https://github.com/LeryLee/vein_segmentation
  1. Download the datasets used in our paper from here. The datasets used in our paper are newly collected. Please cite our paper if you use it for your research.
  • Organize the file structure as below.
|__ vein_segmentation
    |__ code
    |__ data
        |__ LVD2021
  1. Run pretrain.py and self_train.py to train and test the code.

Acknowledgement

mmsegmentation

PointRend

CE-Net

vein_segmentation's People

Contributors

lerylee avatar

Stargazers

Finn Kuusisto avatar avatar

Watchers

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Forkers

uw-madison-dsi

vein_segmentation's Issues

NameError: name 'w_step' is not defined

Here is the complete error:

Traceback (most recent call last):
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 428, in
main(xargs)
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 398, in main
solver_save_path, train_epoch_best_metric, valid_epoch_best_metric = Self_Train(args,
^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 196, in Self_Train
trainset = my_infer.infer_labels(args, trainset, testset, solver, outer_epoch)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 246, in infer_labels
pred_results, b_map_results, logit_results = infer_point(args, trainset, solver, threshold, oute r_epoch, mode='train')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 209, in infer_point
point_logits = point_refiner(None, mask_coarse_logits, mask_features_list, features_scales, feat ures, solver, point_indices_uncertain)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 92, in point_refiner
point_coords[:, 0] = w_step / 2.0 + (point_indices % W).to(torch.float) * w_step
^^^^^^
NameError: name 'w_step' is not defined

NameError: name 'point_coords' is not defined. Did you mean: 'point_logits'?

Traceback (most recent call last):
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 428, in
main(xargs)
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 398, in main
solver_save_path, train_epoch_best_metric, valid_epoch_best_metric = Self_Train(args,
^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/./self_train.py", line 196, in Self_Train
trainset = my_infer.infer_labels(args, trainset, testset, solver, outer_epoch)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 248, in infer_labels
pred_results, b_map_results, logit_results = infer_point(args, trainset, solver, threshold, outer_epoch, mode='train')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 211, in infer_point
point_logits = point_refiner(None, mask_coarse_logits, mask_features_list, features_scales, features, solver, point_indices_uncertain)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/public/home/mzhliu/vein_segmentation/utils/infer.py", line 94, in point_refiner
point_coords[:, 0] = w_step / 2.0 + (point_indices % W).to(torch.float) * w_step
^^^^^^^^^^^^
NameError: name 'point_coords' is not defined. Did you mean: 'point_logits'?

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