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Hualin Liu (刘华林)'s Projects

abricate icon abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

aliyunpan icon aliyunpan

阿里云盘小白羊版 阿里云盘PC版 aliyundriver

amplicon icon amplicon

Statistics and visualization for amplicon data

arg-global icon arg-global

Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk of ARGs from multiple perspectives by using these code.

badges icon badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yours!

berkeley-stat-157 icon berkeley-stat-157

Homepage for STAT 157 at UC Berkeley 含PPT for 《动手学深度学习PyTorch版》

biodata icon biodata

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

bioinfo_versatiles icon bioinfo_versatiles

a set of frequently used perl programs that faciliate bioinformatics analysis jobs, which may be very helpful especially for the new bioinformaticians

bttcmp icon bttcmp

A high-throughput, automatic toxin gene mining pipeline for Bacillus thuringiensis. The project was move to BtToxin_Digger now

bttoxin_digger icon bttoxin_digger

A high-throughput, automatic toxin gene mining pipeline for Bacillus thuringiensis

camisim icon camisim

CAMISIM: Simulating metagenomes and microbial communities

catfasta2phyml icon catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

conda icon conda

OS-agnostic, system-level binary package manager and ecosystem

copd_multiomics icon copd_multiomics

This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.

crisprcasfinder icon crisprcasfinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences

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