liaochenlanruo Goto Github PK

plasclass

A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

plascope

:microscope: :o: Plasmid exploration of bacterial genomes

plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

plasmer

An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.

plasmidid

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

plasmidseeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

python-100-days

Python - 100天从新手到大师

qiime2chinesemanual

QIIME 2中文文档(QIIME 2 Chinese Manual)

reference

为开发人员分享快速参考备忘清单(速查表)

rfplasmid

Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf

rundocs.io

Extends the continuous integration documentation capabilities of GitHub pages for everyone!

scaffold-filter-and-assemble-stats

scaffolds length filter and N50 computing

scapp

SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z

scripts

scycdb

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

shellgpt

**ShellGPT is a free chatgpt client, now Supported online search.no need for a key, no need to log in.Multi-node automatic speed measurement switch,Long text translation with no word limit, AI graphics.免费的chatgpt客户端，已支持联网搜索,无需密钥，无需登录,多节点自动测速切换,长文翻译不限字数,AI出图**

sishi-personal-blog

一个Vue3+Nest的个人博客

squeezemeta

A complete pipeline for metagenomic analysis

staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

strainpanda

A method for reconstruction of subspecies composition and functional profiles from metagenomic data

strapdown.js

:sparkles: StrapDown.js is an awesome javascript tool to quickly publish nice-looking web-pages in pure Markdown :pencil:, with no server side compilation :sunglasses: →

sy179_canyon

Some commands for the analysis

t4sefinder

T4SEfinder: A Genome-scale Annotation Tool for Bacterial Type IV Secretion System Effectors (T4SEs) Using Pre-trained Model.

tax4fun2

This is an unofficial repo for Tax4Fun2

tensorflow

An Open Source Machine Learning Framework for Everyone

tomicsvis

Transcriptomics Visualization R package.

tosica

Transformer for One-Stop Interpretable Cell-type Annotation细胞类型注释工具

tpplots

tputils