lidkalee Goto Github PK
Name: Lidia Lipinska-Zubrycka
Type: User
Bio: Researcher at the University of Warsaw
Twitter: lidkalee
Location: Lodz/ Warsaw
Name: Lidia Lipinska-Zubrycka
Type: User
Bio: Researcher at the University of Warsaw
Twitter: lidkalee
Location: Lodz/ Warsaw
Course Website
Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020
Rmd source files for the HarvardX series PH525x
Config files for my GitHub profile.
Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
tutorials for easy understanding of matplotlib and seaborn commands for graph plotting
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
Scripts for data analysis of plate reader experiments
Data Available as a result of our machine learning groups pl on facebook (learning from book introduction to statistical learning)
Nextflow tutorial based on example by Paulo Di Tomaso and Emilio Palumbo: https://github.com/nextflow-io/rnatoy.git
materials for #NGSchool2019 - Machine Learning for Biomedicine
Introduction to Python3
Library to refactor python code through AST manipulation.
:spaghetti: Pastas is an open-source framework for the analysis of hydrological time series.
Materiały z warsztatów "PoweR, czyli Python i R w Data Science dla początkujących"
Reads resulting from sequencing of TRAID-Seq samples were analyzed using a group of Python scripts that we call the “PuppyTails” program (extract_inserts.py, analyzeTails.py). Briefly, PuppyTails identifies sequences corresponding to the tRNA reporter, CCA end of the tRNA, and added tail in read 1. In read 2, the program identifies the random heptamer sequence, added tail sequence, and, if read length allows, the CCA end and tRNA reporter sequence. Reads were collapsed into unique ligation events using the random heptamer and then compared to identify and remove sequences resulting from PCR amplification (PCR duplicates). The number of unique times that each tail sequence is observed is counted. Tail sequences are sorted by length to calculate the nucleotide composition at each tail length and the number of tails per million heptamers (TPMH) measured for each tail length; these data are plotted as tail-o-grams. A subsequent Perl script (Total_Percent_nt_Analyses-vs1d.pl) was used to calculate the overall nucleotide composition of tails added by a given rNTase, accounting for the number of times that a tail sequence was observed.
Python Data Science Handbook: full text in Jupyter Notebooks
Introduction to R
R for data science: a book
Source files for "Learning Statistics with R"
R course materials
A proof of concept RNA-Seq pipeline with Nextflow
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.