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plotly.js

Open-source JavaScript charting library behind Plotly and Dash

plyranges

A grammar of genomic data transformation

pplacer

Phylogenetic placement and downstream analysis

propagate

prottest3

Automatically exported from code.google.com/p/prottest3

public_db_file_transfer

pullseq

Utility program for extracting sequences from a fasta/fastq file

py4bio

Public data for the book Python for Bioinformatics

pyani

Python module for average nucleotide identity analyses

pym

Python for you and me book

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

python-cookbook-3rd-edition-jupyternotebook-code

This repo contains the code in the 3rd Edition Python Cookbook by David Beazley and Brian K. Jones in Jupyter Notebooks

python-end-to-end-data-analysis

Code repository for Python End to end Data Analysis, Published By Packt

python-newick

python package to read and write the Newick format

python-scripts

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime-deploy

Tool to easily install QIIME on Linux systems

qiime2-session

Material for Trainning session with QIIME2 for Microbial diversity analysis using 16S rRNA gene

qiime2_used_code

qiime2 pipeline, code frequenctly used

qiime2chinesemanual

QIIME 2中文文档(QIIME 2 Chinese Manual)

quast

Genome assembly evaluation tool

r-color-palettes

Comprehensive list of color palettes available in r

r-network-visualization-workshop

Static and dynamic network visualization with R - code and tutorial from Sunbelt 2019 workshop.

r-plot-sda

plotting, statistics and R

r-statistics-ecology

statistics and ecology related topic and scripts

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

rare-and-abundant-bacteria-

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

raw

The missing link between spreadsheets and data visualization

raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible