Comments (3)
Hi,
If you want to plot only one cluster, you can subset the data.frame containing only that cluster and then use the function. I have never tried that, let me know if that works. Or let me know if that wasn't the question :)
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I had tried subsetting cluster_rlog prior to sending it to the degPatterns function but not subsetting the degPatterns output variable prior to inputting in degPlotCluster. I'll try that and let you know if it doesn't work. Thanks for your reply.
from degreport.
That did work. I output the genes for the cluster I'm interested in and then subset clusters1$normalized using the following code: group3cluster <- subset(clusters1$normalized, clusters1$normalized$genes %in% group3$genes)
then I can pass group3cluster to degPlotCluster and only output that one plot.
Thanks so much!
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Related Issues (20)
- `degCovariates`: breaking change in dplyr filter code HOT 6
- Problem with `summarise()` HOT 4
- Error in rep("one_group", nrow(metadata)) : invalid 'times' argument HOT 8
- Error in install.packages : ERROR: failed to lock directory HOT 1
- Extract the genes of each group pattern HOT 2
- Plot shows only one coldata group on x-axis HOT 3
- lasso2 is an R4 only package HOT 1
- z-scores of gene abudance HOT 10
- Show Expression Changes from One Cluster HOT 5
- Extracting Gene-Gene distance matrix from DegPatterns HOT 3
- Sort each cluster graph numerically HOT 1
- Validate the clusters from degPatterns HOT 2
- Regarding Group # from degPatterns Output HOT 2
- Regarding Clustering Based on Expression Pattern HOT 1
- `lasso2` dependency no longer on CRAN HOT 5
- Boxplot position HOT 1
- issues with degPatterns not setting Time in Normalize HOT 8
- degCovariates does not shade by r value HOT 5
- How does degPatterns() decide what height to use for cutting tree HOT 1
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