Comments (8)
ludvigak
commented on July 29, 2024
Hi!
Sorry for replying late, let's see if we can get this working for you!
First thing to check is whether the build actually was successful.
- Can you run
build FINUFFT? - Are any errors reported in
deps/build.log? - Is there a file called
deps/usr/lib/libfinufft.*?
I don't have access to a Mac myself, so setting up and debugging the build process is a bit tricky. It's currently hardwired to GCC 8, so you either need to have that or change the build script.
Also, I have no idea whether things might behave differently with JuliaPro. I would hope not, but I haven't tried it myself.
from finufft.jl.
CHNPAT005
commented on July 29, 2024
Hi, thank you for the response!
- This is what I get from running `build FINUFFT':
build FINUFFT
Building Conda ──→ ~/.juliapro/JuliaPro_v1.2.0-1/packages/Conda/kLXeC/deps/build.log
Building FINUFFT → ~/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/build.log
- Here is the output in
deps/build.log:
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.0
latest version: 4.8.1
Please update conda by running
$ conda update -n base -c defaults conda
All requested packages already installed.
make: lib/libfinufft.so' is up to date. [ Info: Running conda install -y fftw` in /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr environment
[ Info: Attempting to create directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/downloads
[ Info: Directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/downloads already exists
[ Info: Downloading file https://github.com/flatironinstitute/finufft/archive/1.1.1.zip
[ Info: Done downloading file https://github.com/flatironinstitute/finufft/archive/1.1.1.zip
[ Info: Attempting to create directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src
[ Info: Directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src already exists
[ Info: Attempting to create directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps
[ Info: Directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps already exists
[ Info: Path /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src/finufft-1.1.1 already exists
[ Info: Changing directory to /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src/finufft-1.1.1
[ Info: Changing directory to /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src/finufft-1.1.1
[ Info: Attempting to create directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib
[ Info: Directory /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib already exists
[ Info: Changing directory to /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src/finufft-1.1.1
lib = BinDeps.libdir(fftw) = "/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib"
inc = BinDeps.includedir(fftw) = "/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/include"
-
There is currently no file called
deps/usr/lib/libfinufft.*, there is onlydeps/usr/lib/libfinufft.dylib. -
I did find that the error message:
ERROR: LoadError: LoadError: LoadError: Unable to load libfinufft (/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib/libfinufft.dylib) Please re-run Pkg.build(package), and restart Julia.
Comes from an error message printed from the filedeps/deps.jl -
It seems that I am not running GCC 8, what do you think will be easier to change?
from finufft.jl.
ludvigak
commented on July 29, 2024
Hmm, that is confusing, so are you saying that the file /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib/libfinufft.dylib exists?
from finufft.jl.
CHNPAT005
commented on July 29, 2024
Yes it does
There previously wasn't
/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib/libfinufft.a, but i added it recently as I noticed all the other files also had a .a version.
With or without the .a version - I get the same error as before.
from finufft.jl.
ludvigak
commented on July 29, 2024
deps/deps.jl should have a line that starts with @checked_lib libfinufft , that points to the libfinufft library file created by the build process. If that file exists, then you shouldn't get that error.
Could you remove the folders deps/usr and deps/src, run build FINUFFT again, and re-post the contents of deps/build.log ?
from finufft.jl.
CHNPAT005
commented on July 29, 2024
I have changed it to GCC 8 and here is the new contents of deps/build.log:
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
Package Plan
environment location: /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr
added / updated specs:
- fftw
The following packages will be downloaded:
package | build
---------------------------|-----------------
fftw-3.3.8 | h1de35cc_3 2.0 MB
------------------------------------------------------------
Total: 2.0 MB
The following NEW packages will be INSTALLED:
fftw pkgs/main/osx-64::fftw-3.3.8-h1de35cc_3
Downloading and Extracting Packages
fftw-3.3.8 | 2.0 MB | | 0%
fftw-3.3.8 | 2.0 MB | | 1%
fftw-3.3.8 | 2.0 MB | 1 | 2%
fftw-3.3.8 | 2.0 MB | 3 | 3%
fftw-3.3.8 | 2.0 MB | 5 | 5%
fftw-3.3.8 | 2.0 MB | 6 | 6%
fftw-3.3.8 | 2.0 MB | 8 | 9%
fftw-3.3.8 | 2.0 MB | # | 10%
fftw-3.3.8 | 2.0 MB | #1 | 12%
fftw-3.3.8 | 2.0 MB | #3 | 13%
fftw-3.3.8 | 2.0 MB | #4 | 15%
fftw-3.3.8 | 2.0 MB | #6 | 16%
fftw-3.3.8 | 2.0 MB | #7 | 18%
fftw-3.3.8 | 2.0 MB | #9 | 19%
fftw-3.3.8 | 2.0 MB | ## | 21%
fftw-3.3.8 | 2.0 MB | ##2 | 22%
fftw-3.3.8 | 2.0 MB | ##4 | 24%
fftw-3.3.8 | 2.0 MB | ##6 | 26%
fftw-3.3.8 | 2.0 MB | ##7 | 28%
fftw-3.3.8 | 2.0 MB | ###1 | 32%
fftw-3.3.8 | 2.0 MB | ###4 | 35%
fftw-3.3.8 | 2.0 MB | ###7 | 38%
fftw-3.3.8 | 2.0 MB | ####1 | 41%
fftw-3.3.8 | 2.0 MB | ####4 | 44%
fftw-3.3.8 | 2.0 MB | ####7 | 47%
fftw-3.3.8 | 2.0 MB | ####9 | 50%
fftw-3.3.8 | 2.0 MB | #####2 | 53%
fftw-3.3.8 | 2.0 MB | #####6 | 57%
fftw-3.3.8 | 2.0 MB | ###### | 60%
fftw-3.3.8 | 2.0 MB | ######4 | 64%
fftw-3.3.8 | 2.0 MB | ######8 | 69%
fftw-3.3.8 | 2.0 MB | #######2 | 73%
fftw-3.3.8 | 2.0 MB | #######8 | 78%
fftw-3.3.8 | 2.0 MB | ########2 | 83%
fftw-3.3.8 | 2.0 MB | ########7 | 88%
fftw-3.3.8 | 2.0 MB | #########2 | 92%
fftw-3.3.8 | 2.0 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.0
latest version: 4.8.1
Please update conda by running
$ conda update -n base -c defaults conda
Archive: /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/downloads/1.1.1.zip
abdee011c826ac95ff5e7069622bf87f2c18651e
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g++-8 -c -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp src/spreadinterp.cpp -o src/spreadinterp.o
g++-8 -c -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp src/utils.cpp -o src/utils.o
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/finufft1d.o src/finufft1d.cpp
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/finufft2d.o src/finufft2d.cpp
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/finufft3d.o src/finufft3d.cpp
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/dirft1d.o src/dirft1d.cpp
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/dirft2d.o src/dirft2d.cpp
g++-8 -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp -c -o src/dirft3d.o src/dirft3d.cpp
g++-8 -c -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp src/common.cpp -o src/common.o
gcc-8 -c -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp contrib/legendre_rule_fast.c -o contrib/legendre_rule_fast.o
g++-8 -c -fPIC -O3 -funroll-loops -march=native -fcx-limited-range -I src -fopenmp -DNEED_EXTERN_C -fopenmp fortran/finufft_f.cpp -o fortran/finufft_f.o
g++-8 -shared -fopenmp -lfftw3 -lm -lfftw3_threads src/spreadinterp.o src/utils.o src/finufft1d.o src/finufft2d.o src/finufft3d.o src/dirft1d.o src/dirft2d.o src/dirft3d.o src/common.o contrib/legendre_rule_fast.o fortran/finufft_f.o -o lib/libfinufft.so
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[ Info: Changing directory to /Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/src/finufft-1.1.1
lib = BinDeps.libdir(fftw) = "/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/lib"
inc = BinDeps.includedir(fftw) = "/Users/patrickchang/.juliapro/JuliaPro_v1.2.0-1/packages/FINUFFT/bgr7t/deps/usr/include"
I then ran test FINUFFT and it worked!!!
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CHNPAT005
commented on July 29, 2024
I am not sure what fixed the issue:
- making sure I am using GCC8 or
- deleting
deps/usranddeps/srcand rebuilding the package
but it worked!
Thank you for your assistance in this matter and thank you for this work!
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ludvigak
commented on July 29, 2024
Ok, that is good news! =)
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Related Issues (20)
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