This repository contains some scripts used during my PhD.
directory/
and function:
geneconservation/
evaluate the presence of viral genes in genomes of an specified clade using OrthoFinder (https://doi.org/10.1186/s13059-019-1832-y).
imageJprocessing/
Analysis of MicrobeJ output for comparison of cytological parameters.
phagevir/
implementation of the Phage Virulence Index (https://doi.org/10.1089/phage.2019.0001).