Name: Michael Jahn
Type: User
Company: Max Planck Unit for the Science of Pathogens
Bio: Bioinformatics researcher @MPUSP - Max Planck Unit for the Science of Pathogens. Postdoc at Science For Life Lab, Stockholm. PhD from University of Leipzig.
Twitter: mich_jahn
Location: Berlin, Germany
Blog: https://m-jahn.github.io/
Michael Jahn's Projects
Htmlwidgets binding R commands to the BioCircos.js library
Cellular economy models based on global optimization using GAMS
Cellular economy models for simulation of biological optimizaton problems
R package exposing CGAL 4 C++ header-only library
Pipeline to process CRISPRi library sequencing data
curriculum vitae
The content of my blog, https://europebynumbers.wordpress.com/.
Tools and figures to aide experimental design, such as power analysis
R package to Import and Modify SVG (XML) Graphic Files
Genome scale metabolic models in SBML format
Visualize and annotate genomic coverage with ggplot2
:round_pushpin: Repel overlapping text labels away from each other.
Jupyter notebooks for various unconnected projects
Digital Laboratory Notebook with R markdown
Panel functions and wrappers to extend the R lattice universe
Github profile page
Project descriptions, publication list, blog, and other resources related to my work
workflows for openMS using KNIME framework
LaTeX template for MAS R&D and thesis proposals
Effect of amino acid supplementation on fitness in a CRISPRi library
R markdown notebooks for analysis of CRISPR inhibition library data
Analysis of human Frizzled 5 receptor mutants
Pipelines for data analysis and visualization of the Ralstonia energy metabolism
Pipelines for data analysis and visualization of the Ralstonia proteome
often used R scripts for bio-informatics work and plotting
Ralstonia eutropha BarSeq analysis
R Shiny App to show basic features of microbial genomes
R Shiny based interface for browsing fitness data from transposon or CRISPRi libraries