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lattice-tools's Introduction

Michael Jahn, PhD

  • 🔭 Postdoctoral Researcher at Max Planck Unit for the Science of Pathogens
  • 🏠 Situated in Berlin, Germany
  • 🌱 Interested in microbial physiology, computational biology, Omics studies
  • 📝 Most recent publication: CRISPRi library in cyanobacteria
  • 📫 Contact me: [email protected]

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lattice-tools's Issues

custom width of bars

This is a feature request for function "panel.errbars()": sometimes it would be helpful to provide the width of the error bars directly, e.g. in case of asymmetric error bars like for rates etc. In these cases argument "error_margin" could be a 2 columns matrix with upper and lower limits.

flat overlapping disitrubtion of labels with `panel.directlabels()`

Flat overlapping disitrubtion of labels with panel.directlabels() when using the option positioning = ggrepel. ggrepel is much faster in computing label positions, but does not perform well when many points are distributed along a line, although there's enough space on the plot region.

coloring of text labels with `panel.directlabels` does not correspond to points when colors are specified manually

Coloring of text labels panel.directlabels does not correspond to points when colors are specified manually.
In this example, are color vector is specified in the main body of xyplot which whirls label colors around.

xyplot(mpg ~ wt , mtcars,
  groups = cyl, pch = 19, labels = mtcars$car,
  col = 1:3, 
  as.table = TRUE, cex = 0.6,
  panel = function(x, y, ...) {
    panel.xyplot(x, y, ...)
    panel.directlabel(x, y, draw_box = TRUE, box_line = TRUE, y_boundary = c(20, 25), ...)
  }
)

travis CI fails with errors related to quadprog dependency

Travis CI recently throws errors for commits that have worked previously. The chnage must therefore come from a dependency that was updated. The error message is:

Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/travis/R/Library/quadprog/libs/quadprog.so':
  libRblas.so: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘latticetools’
* removing ‘/tmp/RtmpQixtCX/Rinst3790614754c8/latticetools’

The error seems to come from quadprog, a dependency of directlabels package. However, quadprog itself has no other dependencies and should not need local installation of lipblas and liblapack on linux systems. But complains that a compiled C++ file is missing.

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