Simone Maestri's Projects
A script for removing artificial duplications introduced by Bionano solve scaffolding pipeline
An ONT-based pipeline for characterizing long genomic regions
A NextFlow ONT-based pipeline for characterizing long genomic regions
A set of scripts for running the ARTIC pipeline from fast5 ONT data to filtered SARS-CoV-2 variants and coverage plots
A utility to generate input files for taxonomy assignment in QIIME from the NCBI database
A quality check, alignment and small variant calling pipeline for Illumina paired-end reads
My personal repository
A Metagenomic pipeline for parallel Blast analysis and report generation.
A Metagenomic pipeline for Kraken2 analysis and Krona report generation.
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
A pipeline for schematic IGV visualization of expanded CNBP alleles with somatic mosaicism
A pipeline for schematic IGV visualization of FMR1 alleles with somatic mosaicism
A pipeline for schematic IGV visualization of HTT alleles with somatic mosaicism
A NextFlow pipeline for modifications detection from Nanopore direct RNA-seq data
A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data
A NextFlow pipeline for Metagenomic Sequencing with Spiked Primer Enrichment
A preprocessing pipeline for ONT data
An ONT-based pipeline for haplotype phasing
A MinION-based pipeline for tracking species biodiversity
A Nextflow MinION-based pipeline for tracking species biodiversity
A nextflow pipeline for running pycoMeth
A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs