Proof of concept to include Quarto documents as sections in MultiQC, wrapped up in Nextflow.

MultiQC supports a lot of tools, but not all. Since it's designed primarily for summaries of large sets of samples, this means that some tools have a hard time getting plugins since you're only interested in a few plots. While MultiQC supports custom content, sets of images are not really supported well. Quarto is a flexible publishing tool that lets you use most languages to process inputs and lay them out as you want. As a result, you can do things like create tabbed panels per sample and then include this html as custom content in MultiQC.