Giter VIP home page Giter VIP logo

markdown's Introduction

Time Subject notes
Day1: 5 Nov 2018
9-9:15 am Housekeeping + Icebreaker Slides + group activity
9:15-10:45 am Intro to CLI Lecture + hands on
10:45-11:00 am Break
11:00-11:30 pm Introduction to HTS Lecture
11:30-11:50 pm Intro to QC Lecture
11:50-12:30 pm Assess quality of sequence data Hands on exercise
12:30-12:45 pm Recap + QA Group discussion
Day2: 6 Nov 2018
9:00-9:45 am Intro to denovo assembly Lecture
9:45-10:45 am Compile and explore Velvet + read data Practice
10:45-11:00 am Break
11:00-11:30 am Assembly activity I group activity
11:30-12:30 pm Perform assembly using different settings Practice
12:30-1:30 pm Break
1:30-2:00 pm Assembly activity II Group discussion
2:00-3:00 pm Assembly visualization and exploration Practice
3:00-3:15 pm Break
3:15-4:00 pm Assembly Stats summary Practice
4:00-5:00 pm Assembly talk part II Lecture
Day3: 7 Nov 2018
9:00-10:00 am Run eukaryotic assembly Practice
10:00-10:45 am Assembly statistics Practice
10:45-11:00 am Break
10:50-11:20 am Scaffolding Practice/ discussion
11:20-12:30 pm Long read assembly Lecture + Practice
12:30-1:30 pm Break
1:30-1:45 pm Intro to Alignment Lecture
1:45-2:15 pm Alignment and processing bams AS/CD Practice
2:15-3pm RNAseq: align reads from two conditions AS/CD Practice
3-3:15 pm break
3:15-3:30 pm Quick refresher on RNAseq experiment SA Lecture
3:30-4 pm Align Reads. Visualise and explore bam files AS/CD Practice
4-4:20 pm RNAseq: transcript assembly AS/CD Practice
4:20 - 4:45 pm RNAseq: DE using edgeR AS/CD Practice
4:45-5 pm Wrap up

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.