Comments (3)
Hi Jordi,
We currently use a tagged release model rather than a stable tip, so it's fine just to have new features in master. Also on that note, do you think it would work to have a separate project for mashpy that included mash as a git submodule? As long as the API code doesn't need to modify the base mash source, I think that might be easier all around, since you wouldn't have to worry about pull requests.
from mash.
Hello @ondovb
There is no problem at all in having in working it in a separated repo. It is true that we do not have to worry about pull requests then but I will relay on you in modifying the C++/C API. If the idea is to have mashpy totally separated I agree on it but there are things like the CMake building process, the C++ tests, the CI Server that should be in the main project.
What do you think about me doing all this work in my own fork of the project and if we see that it is useful for the main project ending merging some of the features?
from mash.
Yes, I think the fork makes sense for now, and I can merge things when I get time to look closer.
from mash.
Related Issues (20)
- how many genomes can the mash deal with?
- Update RefSeq? HOT 2
- output the containment sequence HOT 3
- Sorting on mash-distance HOT 1
- Sketching paired- and single-end reads together
- Inconsistent number of matching hashes HOT 1
- Are Mash distances always symmetric?
- Missing include limits
- Mash dist -p, wrong number of threads (bug?)
- m1 ARM support?
- Cannot update Mash from version 1.1 to version 2
- -M for weighted kmer
- Can Mash accurately classify subspecies? HOT 1
- Doubts when using mash on multiple assemblies HOT 1
- MASH distance for AA
- Explanation of the .msh format HOT 2
- The release version of refseq.genomes.k21.s1000.msh
- Argument list too long HOT 2
- Distance between two genomes not consistent when I chnage the rest of the dataset. HOT 2
- Add brief description about what MASH does to the README.md
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mash.